Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 SCARNA2-201ENST00000458748 420 ntBASIC20.15■□□□□ 0.82
BRF1Q92994 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.15■□□□□ 0.82
BRF1Q92994 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
BRF1Q92994 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.15■□□□□ 0.82
BRF1Q92994 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 AL589182.2-201ENST00000619332 1049 ntBASIC20.15■□□□□ 0.82
BRF1Q92994 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
BRF1Q92994 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.15■□□□□ 0.82
BRF1Q92994 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
BRF1Q92994 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
BRF1Q92994 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
BRF1Q92994 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
BRF1Q92994 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
BRF1Q92994 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.14■□□□□ 0.82
BRF1Q92994 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.14■□□□□ 0.82
BRF1Q92994 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
BRF1Q92994 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.14■□□□□ 0.81
BRF1Q92994 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.14■□□□□ 0.81
BRF1Q92994 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.14■□□□□ 0.81
BRF1Q92994 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.14■□□□□ 0.81
BRF1Q92994 PKD1P1-201ENST00000458669 6805 ntBASIC20.14■□□□□ 0.81
BRF1Q92994 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.14■□□□□ 0.81
BRF1Q92994 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.14■□□□□ 0.81
BRF1Q92994 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.14■□□□□ 0.81
BRF1Q92994 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.14■□□□□ 0.81
BRF1Q92994 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
BRF1Q92994 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
BRF1Q92994 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.14■□□□□ 0.81
BRF1Q92994 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRF1Q92994 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.13■□□□□ 0.81
BRF1Q92994 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 PCDHB17P-201ENST00000539533 2393 ntBASIC20.13■□□□□ 0.81
BRF1Q92994 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
BRF1Q92994 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.13■□□□□ 0.81
BRF1Q92994 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.13■□□□□ 0.81
BRF1Q92994 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.13■□□□□ 0.81
BRF1Q92994 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.13■□□□□ 0.81
BRF1Q92994 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.13■□□□□ 0.81
BRF1Q92994 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
BRF1Q92994 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.13■□□□□ 0.81
BRF1Q92994 AL139424.1-201ENST00000607572 797 ntBASIC20.13■□□□□ 0.81
BRF1Q92994 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
BRF1Q92994 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.13■□□□□ 0.81
BRF1Q92994 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
BRF1Q92994 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 AC078925.2-201ENST00000624013 1973 ntBASIC20.13■□□□□ 0.81
BRF1Q92994 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
BRF1Q92994 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.13■□□□□ 0.81
BRF1Q92994 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRF1Q92994 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.13■□□□□ 0.81
BRF1Q92994 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.12■□□□□ 0.81
BRF1Q92994 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
BRF1Q92994 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 AP002414.1-201ENST00000391405 1147 ntBASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms