Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
ERCC4Q92889 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
ERCC4Q92889 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
ERCC4Q92889 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
ERCC4Q92889 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
ERCC4Q92889 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
ERCC4Q92889 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.47■□□□□ 0.71
ERCC4Q92889 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.46■□□□□ 0.71
ERCC4Q92889 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.46■□□□□ 0.71
ERCC4Q92889 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 AL603756.1-201ENST00000606511 2163 ntBASIC19.46■□□□□ 0.71
ERCC4Q92889 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
ERCC4Q92889 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.46■□□□□ 0.71
ERCC4Q92889 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.46■□□□□ 0.71
ERCC4Q92889 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.46■□□□□ 0.71
ERCC4Q92889 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.46■□□□□ 0.71
ERCC4Q92889 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.46■□□□□ 0.71
ERCC4Q92889 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.46■□□□□ 0.71
ERCC4Q92889 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.46■□□□□ 0.71
ERCC4Q92889 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.46■□□□□ 0.71
ERCC4Q92889 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.46■□□□□ 0.71
ERCC4Q92889 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.46■□□□□ 0.71
ERCC4Q92889 AL135999.2-201ENST00000622438 1686 ntBASIC19.46■□□□□ 0.71
ERCC4Q92889 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC4Q92889 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ERCC4Q92889 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.45■□□□□ 0.7
ERCC4Q92889 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.45■□□□□ 0.7
ERCC4Q92889 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.45■□□□□ 0.7
ERCC4Q92889 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.45■□□□□ 0.7
ERCC4Q92889 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.45■□□□□ 0.7
ERCC4Q92889 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.45■□□□□ 0.7
ERCC4Q92889 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ERCC4Q92889 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.45■□□□□ 0.7
ERCC4Q92889 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.45■□□□□ 0.7
ERCC4Q92889 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.45■□□□□ 0.7
ERCC4Q92889 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.45■□□□□ 0.7
ERCC4Q92889 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC4Q92889 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.44■□□□□ 0.7
ERCC4Q92889 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC4Q92889 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC4Q92889 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
ERCC4Q92889 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC4Q92889 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC4Q92889 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.44■□□□□ 0.7
ERCC4Q92889 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.44■□□□□ 0.7
ERCC4Q92889 AC092364.2-201ENST00000596710 2692 ntBASIC19.44■□□□□ 0.7
ERCC4Q92889 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.44■□□□□ 0.7
ERCC4Q92889 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC4Q92889 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
ERCC4Q92889 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC4Q92889 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.44■□□□□ 0.7
ERCC4Q92889 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.44■□□□□ 0.7
ERCC4Q92889 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.44■□□□□ 0.7
ERCC4Q92889 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC4Q92889 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.44■□□□□ 0.7
ERCC4Q92889 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.44■□□□□ 0.7
ERCC4Q92889 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms