Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 AC232323.1-201ENST00000540724 2099 ntBASIC10.66□□□□□ -0.7
LINC00643Q86TS7 REXO1L5P-201ENST00000622260 2098 ntBASIC10.66□□□□□ -0.7
LINC00643Q86TS7 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 BRD4-212ENST00000630599 726 ntTSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 KRT87P-202ENST00000534226 1464 ntBASIC10.66□□□□□ -0.7
LINC00643Q86TS7 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 BEND3P1-201ENST00000421591 1944 ntBASIC10.66□□□□□ -0.7
LINC00643Q86TS7 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 AC010491.1-201ENST00000563101 2797 ntBASIC10.65□□□□□ -0.7
LINC00643Q86TS7 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 LCK-206ENST00000373564 2137 ntTSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 DUX4L18-201ENST00000553347 1267 ntBASIC10.65□□□□□ -0.7
LINC00643Q86TS7 AC105233.4-201ENST00000642045 216 ntBASIC10.65□□□□□ -0.7
LINC00643Q86TS7 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC10.65□□□□□ -0.7
LINC00643Q86TS7 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms