Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CDH6P55285 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CDH6P55285 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.83■□□□□ 0.45
CDH6P55285 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.83■□□□□ 0.45
CDH6P55285 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CDH6P55285 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.83■□□□□ 0.45
CDH6P55285 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDH6P55285 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDH6P55285 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
CDH6P55285 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDH6P55285 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.83■□□□□ 0.44
CDH6P55285 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.83■□□□□ 0.44
CDH6P55285 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.83■□□□□ 0.44
CDH6P55285 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CDH6P55285 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 AL356309.3-201ENST00000624132 1934 ntBASIC17.83■□□□□ 0.44
CDH6P55285 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.83■□□□□ 0.44
CDH6P55285 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.83■□□□□ 0.44
CDH6P55285 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.83■□□□□ 0.44
CDH6P55285 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.83■□□□□ 0.44
CDH6P55285 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CDH6P55285 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 LINC01711-201ENST00000598340 967 ntBASIC17.83■□□□□ 0.44
CDH6P55285 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.83■□□□□ 0.44
CDH6P55285 AC012313.10-201ENST00000623509 926 ntBASIC17.83■□□□□ 0.44
CDH6P55285 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.83■□□□□ 0.44
CDH6P55285 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
CDH6P55285 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CDH6P55285 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CDH6P55285 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH6P55285 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH6P55285 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CDH6P55285 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.82■□□□□ 0.44
CDH6P55285 PRYP5-201ENST00000451909 266 ntBASIC17.82■□□□□ 0.44
CDH6P55285 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.82■□□□□ 0.44
CDH6P55285 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.82■□□□□ 0.44
CDH6P55285 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH6P55285 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.82■□□□□ 0.44
CDH6P55285 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.82■□□□□ 0.44
CDH6P55285 AL139288.1-201ENST00000623748 933 ntBASIC17.82■□□□□ 0.44
CDH6P55285 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CDH6P55285 AL022326.1-202ENST00000641533 845 ntBASIC17.82■□□□□ 0.44
CDH6P55285 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CDH6P55285 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CDH6P55285 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CDH6P55285 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH6P55285 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CDH6P55285 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CDH6P55285 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
CDH6P55285 AGGF1P2-201ENST00000426656 2106 ntBASIC17.81■□□□□ 0.44
CDH6P55285 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CDH6P55285 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CDH6P55285 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH6P55285 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms