Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.08■□□□□ 0.48
LIG3P49916 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.08■□□□□ 0.48
LIG3P49916 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.08■□□□□ 0.48
LIG3P49916 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.08■□□□□ 0.48
LIG3P49916 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
LIG3P49916 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.08■□□□□ 0.48
LIG3P49916 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.08■□□□□ 0.48
LIG3P49916 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.08■□□□□ 0.48
LIG3P49916 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.08■□□□□ 0.48
LIG3P49916 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 AC026691.1-201ENST00000602502 2017 ntBASIC18.08■□□□□ 0.48
LIG3P49916 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.08■□□□□ 0.48
LIG3P49916 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.08■□□□□ 0.48
LIG3P49916 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
LIG3P49916 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.07■□□□□ 0.48
LIG3P49916 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LIG3P49916 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
LIG3P49916 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LIG3P49916 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
LIG3P49916 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.07■□□□□ 0.48
LIG3P49916 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.07■□□□□ 0.48
LIG3P49916 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
LIG3P49916 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.07■□□□□ 0.48
LIG3P49916 AC012615.1-201ENST00000565797 1299 ntBASIC18.07■□□□□ 0.48
LIG3P49916 PRELID1P1-202ENST00000567272 903 ntBASIC18.07■□□□□ 0.48
LIG3P49916 AC011840.4-201ENST00000578471 627 ntBASIC18.07■□□□□ 0.48
LIG3P49916 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.07■□□□□ 0.48
LIG3P49916 AC009154.2-201ENST00000621177 724 ntBASIC18.07■□□□□ 0.48
LIG3P49916 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.07■□□□□ 0.48
LIG3P49916 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.07■□□□□ 0.48
LIG3P49916 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIG3P49916 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.06■□□□□ 0.48
LIG3P49916 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 AC079328.2-201ENST00000561241 3354 ntBASIC18.06■□□□□ 0.48
LIG3P49916 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.06■□□□□ 0.48
LIG3P49916 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 AL845331.1-201ENST00000424978 1190 ntBASIC18.06■□□□□ 0.48
LIG3P49916 VENTXP7-201ENST00000475503 772 ntBASIC18.06■□□□□ 0.48
LIG3P49916 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.06■□□□□ 0.48
LIG3P49916 KRT126P-201ENST00000549467 1181 ntBASIC18.06■□□□□ 0.48
LIG3P49916 AC074051.2-201ENST00000565115 352 ntBASIC18.06■□□□□ 0.48
LIG3P49916 Z69720.1-201ENST00000601483 472 ntBASIC18.06■□□□□ 0.48
LIG3P49916 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.06■□□□□ 0.48
LIG3P49916 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.06■□□□□ 0.48
LIG3P49916 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
LIG3P49916 AC007950.2-201ENST00000615045 2347 ntBASIC18.06■□□□□ 0.48
LIG3P49916 PHGDH-209ENST00000641074 1780 ntBASIC18.06■□□□□ 0.48
LIG3P49916 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.06■□□□□ 0.48
LIG3P49916 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIG3P49916 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.06■□□□□ 0.48
LIG3P49916 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.05■□□□□ 0.48
LIG3P49916 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms