Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC14.08□□□□□ -0.15
NKX2-1P43699 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC14.08□□□□□ -0.15
NKX2-1P43699 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
NKX2-1P43699 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
NKX2-1P43699 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.08□□□□□ -0.16
NKX2-1P43699 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
NKX2-1P43699 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
NKX2-1P43699 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC14.08□□□□□ -0.16
NKX2-1P43699 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 TSPY12P-201ENST00000421279 868 ntBASIC14.08□□□□□ -0.16
NKX2-1P43699 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.08□□□□□ -0.16
NKX2-1P43699 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC14.08□□□□□ -0.16
NKX2-1P43699 REXO2-216ENST00000544196 452 ntTSL 3 BASIC14.08□□□□□ -0.16
NKX2-1P43699 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 C2orf69P3-201ENST00000565542 1120 ntBASIC14.08□□□□□ -0.16
NKX2-1P43699 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC14.08□□□□□ -0.16
NKX2-1P43699 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC14.08□□□□□ -0.16
NKX2-1P43699 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.08□□□□□ -0.16
NKX2-1P43699 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX2-1P43699 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
NKX2-1P43699 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX2-1P43699 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
NKX2-1P43699 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.07□□□□□ -0.16
NKX2-1P43699 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
NKX2-1P43699 MYCLP1-201ENST00000372451 1075 ntBASIC14.07□□□□□ -0.16
NKX2-1P43699 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC14.07□□□□□ -0.16
NKX2-1P43699 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC14.07□□□□□ -0.16
NKX2-1P43699 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
NKX2-1P43699 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC14.07□□□□□ -0.16
NKX2-1P43699 NEK4P2-201ENST00000580004 1012 ntBASIC14.07□□□□□ -0.16
NKX2-1P43699 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC14.07□□□□□ -0.16
NKX2-1P43699 MIR4785-201ENST00000585005 73 ntBASIC14.07□□□□□ -0.16
NKX2-1P43699 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.07□□□□□ -0.16
NKX2-1P43699 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
NKX2-1P43699 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
NKX2-1P43699 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 ADM-208ENST00000534464 1640 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.07□□□□□ -0.16
NKX2-1P43699 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.07□□□□□ -0.16
NKX2-1P43699 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC14.07□□□□□ -0.16
NKX2-1P43699 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NKX2-1P43699 LINC00554-201ENST00000564841 3011 ntBASIC14.07□□□□□ -0.16
NKX2-1P43699 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NKX2-1P43699 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX2-1P43699 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms