Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL9A1P20849 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL9A1P20849 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.5■□□□□ 0.39
COL9A1P20849 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
COL9A1P20849 AL590787.1-201ENST00000568856 1315 ntBASIC17.49■□□□□ 0.39
COL9A1P20849 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
COL9A1P20849 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.49■□□□□ 0.39
COL9A1P20849 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
COL9A1P20849 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.49■□□□□ 0.39
COL9A1P20849 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.49■□□□□ 0.39
COL9A1P20849 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.49■□□□□ 0.39
COL9A1P20849 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.49■□□□□ 0.39
COL9A1P20849 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.49■□□□□ 0.39
COL9A1P20849 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.49■□□□□ 0.39
COL9A1P20849 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 AC090164.3-201ENST00000610780 2143 ntBASIC17.49■□□□□ 0.39
COL9A1P20849 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.49■□□□□ 0.39
COL9A1P20849 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL9A1P20849 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.49■□□□□ 0.39
COL9A1P20849 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
COL9A1P20849 PI4KAP1-204ENST00000612579 1703 ntBASIC17.49■□□□□ 0.39
COL9A1P20849 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
COL9A1P20849 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL9A1P20849 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.49■□□□□ 0.39
COL9A1P20849 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL9A1P20849 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.48■□□□□ 0.39
COL9A1P20849 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.48■□□□□ 0.39
COL9A1P20849 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
COL9A1P20849 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL9A1P20849 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.48■□□□□ 0.39
COL9A1P20849 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 BTBD6P1-201ENST00000412176 1267 ntBASIC17.48■□□□□ 0.39
COL9A1P20849 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.48■□□□□ 0.39
COL9A1P20849 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.48■□□□□ 0.39
COL9A1P20849 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.48■□□□□ 0.39
COL9A1P20849 HNRNPUP1-201ENST00000554987 333 ntBASIC17.48■□□□□ 0.39
COL9A1P20849 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.48■□□□□ 0.39
COL9A1P20849 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.48■□□□□ 0.39
COL9A1P20849 AL138828.2-201ENST00000615812 383 ntBASIC17.48■□□□□ 0.39
COL9A1P20849 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.48■□□□□ 0.39
COL9A1P20849 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL9A1P20849 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 GNAS-203ENST00000306120 1878 ntBASIC17.48■□□□□ 0.39
COL9A1P20849 AC104581.1-202ENST00000635932 2618 ntBASIC17.48■□□□□ 0.39
COL9A1P20849 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL9A1P20849 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
COL9A1P20849 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
COL9A1P20849 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
COL9A1P20849 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 SPCS2P4-201ENST00000436160 681 ntBASIC17.47■□□□□ 0.39
COL9A1P20849 MIR3615-201ENST00000581999 87 ntBASIC17.47■□□□□ 0.39
COL9A1P20849 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.47■□□□□ 0.39
COL9A1P20849 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.47■□□□□ 0.39
COL9A1P20849 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 CASP16P-204ENST00000635032 809 ntBASIC17.47■□□□□ 0.39
COL9A1P20849 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.47■□□□□ 0.39
COL9A1P20849 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms