Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.16■□□□□ 0.34
SHOX2O60902 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SHOX2O60902 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.16■□□□□ 0.34
SHOX2O60902 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.15■□□□□ 0.34
SHOX2O60902 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.15■□□□□ 0.34
SHOX2O60902 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 AC128676.1-201ENST00000454392 318 ntBASIC17.15■□□□□ 0.34
SHOX2O60902 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SHOX2O60902 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 FSCN1P1-201ENST00000568912 1481 ntBASIC17.15■□□□□ 0.34
SHOX2O60902 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.15■□□□□ 0.34
SHOX2O60902 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SHOX2O60902 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.15■□□□□ 0.34
SHOX2O60902 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHOX2O60902 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.14■□□□□ 0.34
SHOX2O60902 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.14■□□□□ 0.34
SHOX2O60902 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
SHOX2O60902 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.14■□□□□ 0.34
SHOX2O60902 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SHOX2O60902 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.14■□□□□ 0.33
SHOX2O60902 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.14■□□□□ 0.33
SHOX2O60902 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.14■□□□□ 0.33
SHOX2O60902 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.14■□□□□ 0.33
SHOX2O60902 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.14■□□□□ 0.33
SHOX2O60902 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.14■□□□□ 0.33
SHOX2O60902 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.14■□□□□ 0.33
SHOX2O60902 MIR4651-201ENST00000582622 73 ntBASIC17.14■□□□□ 0.33
SHOX2O60902 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.14■□□□□ 0.33
SHOX2O60902 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.14■□□□□ 0.33
SHOX2O60902 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.14■□□□□ 0.33
SHOX2O60902 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.14■□□□□ 0.33
SHOX2O60902 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHOX2O60902 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.13■□□□□ 0.33
SHOX2O60902 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.13■□□□□ 0.33
SHOX2O60902 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SHOX2O60902 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms