Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SDCBPO00560 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDCBPO00560 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDCBPO00560 AC078925.2-201ENST00000624013 1973 ntBASIC14.64□□□□□ -0.07
SDCBPO00560 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SDCBPO00560 AL162727.3-201ENST00000635661 2787 ntBASIC14.63□□□□□ -0.07
SDCBPO00560 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.63□□□□□ -0.07
SDCBPO00560 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.63□□□□□ -0.07
SDCBPO00560 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SDCBPO00560 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.63□□□□□ -0.07
SDCBPO00560 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SDCBPO00560 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SDCBPO00560 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.63□□□□□ -0.07
SDCBPO00560 GUSBP12-201ENST00000513727 720 ntBASIC14.63□□□□□ -0.07
SDCBPO00560 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.63□□□□□ -0.07
SDCBPO00560 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.63□□□□□ -0.07
SDCBPO00560 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC14.63□□□□□ -0.07
SDCBPO00560 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SDCBPO00560 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.63□□□□□ -0.07
SDCBPO00560 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.63□□□□□ -0.07
SDCBPO00560 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.63□□□□□ -0.07
SDCBPO00560 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 AC092068.3-201ENST00000587894 2016 ntBASIC14.63□□□□□ -0.07
SDCBPO00560 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SDCBPO00560 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDCBPO00560 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.62□□□□□ -0.07
SDCBPO00560 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.62□□□□□ -0.07
SDCBPO00560 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.62□□□□□ -0.07
SDCBPO00560 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SDCBPO00560 TSPY22P-201ENST00000427496 604 ntBASIC14.62□□□□□ -0.07
SDCBPO00560 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC14.62□□□□□ -0.07
SDCBPO00560 AL049597.2-201ENST00000565575 961 ntBASIC14.62□□□□□ -0.07
SDCBPO00560 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.62□□□□□ -0.07
SDCBPO00560 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
SDCBPO00560 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.62□□□□□ -0.07
SDCBPO00560 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.62□□□□□ -0.07
SDCBPO00560 ADM-208ENST00000534464 1640 ntTSL 2 BASIC14.62□□□□□ -0.07
SDCBPO00560 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.62□□□□□ -0.07
SDCBPO00560 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDCBPO00560 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.61□□□□□ -0.07
SDCBPO00560 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SDCBPO00560 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC14.61□□□□□ -0.07
SDCBPO00560 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.61□□□□□ -0.07
SDCBPO00560 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms