Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM1O00151 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.39■□□□□ 0.21
PDLIM1O00151 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.38■□□□□ 0.21
PDLIM1O00151 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PDLIM1O00151 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.38■□□□□ 0.21
PDLIM1O00151 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.38■□□□□ 0.21
PDLIM1O00151 MIR1224-201ENST00000408193 85 ntBASIC16.38■□□□□ 0.21
PDLIM1O00151 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.38■□□□□ 0.21
PDLIM1O00151 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.38■□□□□ 0.21
PDLIM1O00151 AC022616.7-201ENST00000525383 220 ntBASIC16.38■□□□□ 0.21
PDLIM1O00151 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.38■□□□□ 0.21
PDLIM1O00151 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM1O00151 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 GCSHP2-201ENST00000560971 527 ntBASIC16.38■□□□□ 0.21
PDLIM1O00151 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM1O00151 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM1O00151 AC140113.3-201ENST00000605663 199 ntBASIC16.38■□□□□ 0.21
PDLIM1O00151 AC010331.1-201ENST00000611423 582 ntBASIC16.38■□□□□ 0.21
PDLIM1O00151 AC112497.1-201ENST00000624824 639 ntBASIC16.38■□□□□ 0.21
PDLIM1O00151 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM1O00151 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.38■□□□□ 0.21
PDLIM1O00151 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM1O00151 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM1O00151 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
PDLIM1O00151 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.38■□□□□ 0.21
PDLIM1O00151 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PDLIM1O00151 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PDLIM1O00151 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM1O00151 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.37■□□□□ 0.21
PDLIM1O00151 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.37■□□□□ 0.21
PDLIM1O00151 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 DDX43P3-201ENST00000441064 443 ntBASIC16.37■□□□□ 0.21
PDLIM1O00151 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 SEC1P-202ENST00000473944 940 ntBASIC16.37■□□□□ 0.21
PDLIM1O00151 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.37■□□□□ 0.21
PDLIM1O00151 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PDLIM1O00151 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 MIR3180-4-201ENST00000582223 153 ntBASIC16.37■□□□□ 0.21
PDLIM1O00151 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
PDLIM1O00151 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
PDLIM1O00151 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM1O00151 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM1O00151 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM1O00151 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.36■□□□□ 0.21
PDLIM1O00151 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.36■□□□□ 0.21
PDLIM1O00151 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM1O00151 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.36■□□□□ 0.21
PDLIM1O00151 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms