Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CHMP1AQ9HD42 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
CHMP1AQ9HD42 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.03
CHMP1AQ9HD42 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CHMP1AQ9HD42 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
CHMP1AQ9HD42 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
CHMP1AQ9HD42 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 COX11P1-201ENST00000489116 835 ntBASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 ZNF444P1-201ENST00000559497 298 ntBASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CHMP1AQ9HD42 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 SLC25A3P1-201ENST00000443844 931 ntBASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 AL138966.2-201ENST00000621997 464 ntBASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 AC016396.2-201ENST00000562575 1417 ntBASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.82□□□□□ -0.04
CHMP1AQ9HD42 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms