Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.27□□□□□ -0.28
CCDC140Q96MF4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 ELK2BP-201ENST00000415014 1224 ntBASIC13.27□□□□□ -0.29
CCDC140Q96MF4 RPS2P1-201ENST00000434010 821 ntBASIC13.27□□□□□ -0.29
CCDC140Q96MF4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
CCDC140Q96MF4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AP002414.1-201ENST00000391405 1147 ntBASIC13.26□□□□□ -0.29
CCDC140Q96MF4 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 FAAHP1-202ENST00000446499 1238 ntBASIC13.26□□□□□ -0.29
CCDC140Q96MF4 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 FAM197Y8-203ENST00000450145 560 ntBASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AC243591.1-201ENST00000452967 1364 ntBASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AC018712.1-201ENST00000455767 687 ntBASIC13.26□□□□□ -0.29
CCDC140Q96MF4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 RNPS1P1-201ENST00000507437 918 ntBASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AL031008.1-201ENST00000619963 541 ntBASIC13.26□□□□□ -0.29
CCDC140Q96MF4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AC106886.4-201ENST00000623557 2502 ntBASIC13.26□□□□□ -0.29
CCDC140Q96MF4 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 NKILA-202ENST00000614771 2598 ntBASIC13.25□□□□□ -0.29
CCDC140Q96MF4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC140Q96MF4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms