Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.76■□□□□ 0.75
CTCFP49711 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.76■□□□□ 0.75
CTCFP49711 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.75■□□□□ 0.75
CTCFP49711 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.75■□□□□ 0.75
CTCFP49711 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 AC132938.6-201ENST00000623828 1655 ntBASIC19.75■□□□□ 0.75
CTCFP49711 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
CTCFP49711 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.75■□□□□ 0.75
CTCFP49711 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC19.75■□□□□ 0.75
CTCFP49711 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.75■□□□□ 0.75
CTCFP49711 GLI4-203ENST00000517468 963 ntTSL 5 BASIC19.75■□□□□ 0.75
CTCFP49711 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC19.75■□□□□ 0.75
CTCFP49711 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.75■□□□□ 0.75
CTCFP49711 AC109462.3-201ENST00000573934 613 ntBASIC19.75■□□□□ 0.75
CTCFP49711 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 AC244093.1-201ENST00000610837 814 ntBASIC19.75■□□□□ 0.75
CTCFP49711 MIR6775-201ENST00000617557 69 ntBASIC19.75■□□□□ 0.75
CTCFP49711 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.75■□□□□ 0.75
CTCFP49711 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CTCFP49711 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.75■□□□□ 0.75
CTCFP49711 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CTCFP49711 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTCFP49711 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
CTCFP49711 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC19.74■□□□□ 0.75
CTCFP49711 BNIP3P42-201ENST00000454982 569 ntBASIC19.74■□□□□ 0.75
CTCFP49711 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 PRR29-204ENST00000577953 565 ntTSL 4 BASIC19.74■□□□□ 0.75
CTCFP49711 BNIP3P29-201ENST00000598302 571 ntBASIC19.74■□□□□ 0.75
CTCFP49711 RNA5-8SN1-201ENST00000610460 153 ntBASIC19.74■□□□□ 0.75
CTCFP49711 RNA5-8SN5-202ENST00000612463 153 ntBASIC19.74■□□□□ 0.75
CTCFP49711 RNA5-8SN4-201ENST00000613359 153 ntBASIC19.74■□□□□ 0.75
CTCFP49711 AC011447.5-201ENST00000616168 564 ntBASIC19.74■□□□□ 0.75
CTCFP49711 RNA5-8SN5-201ENST00000619471 153 ntBASIC19.74■□□□□ 0.75
CTCFP49711 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CTCFP49711 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CTCFP49711 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CTCFP49711 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTCFP49711 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CTCFP49711 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CTCFP49711 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC19.73■□□□□ 0.75
CTCFP49711 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.73■□□□□ 0.75
CTCFP49711 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.73■□□□□ 0.75
CTCFP49711 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC19.73■□□□□ 0.75
CTCFP49711 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 HLA-V-204ENST00000476601 1289 ntBASIC19.73■□□□□ 0.75
CTCFP49711 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC19.73■□□□□ 0.75
CTCFP49711 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.73■□□□□ 0.75
CTCFP49711 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CTCFP49711 AC009407.1-201ENST00000568958 598 ntBASIC19.73■□□□□ 0.75
CTCFP49711 AP000842.3-202ENST00000569238 1080 ntBASIC19.73■□□□□ 0.75
CTCFP49711 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.73■□□□□ 0.75
CTCFP49711 AC008494.3-201ENST00000606615 944 ntBASIC19.73■□□□□ 0.75
CTCFP49711 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC19.73■□□□□ 0.75
CTCFP49711 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CTCFP49711 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 AC009336.1-201ENST00000608941 1553 ntBASIC19.73■□□□□ 0.75
CTCFP49711 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CTCFP49711 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms