Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX2P48431 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SOX2P48431 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX2P48431 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC15.16■□□□□ 0.02
SOX2P48431 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC15.16■□□□□ 0.02
SOX2P48431 IGHV3-52-201ENST00000519770 353 ntBASIC15.16■□□□□ 0.02
SOX2P48431 AC010203.1-204ENST00000548782 407 ntBASIC15.16■□□□□ 0.02
SOX2P48431 AC109462.3-201ENST00000573934 613 ntBASIC15.16■□□□□ 0.02
SOX2P48431 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.16■□□□□ 0.02
SOX2P48431 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.16■□□□□ 0.02
SOX2P48431 AL031432.5-201ENST00000641059 760 ntBASIC15.16■□□□□ 0.02
SOX2P48431 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SOX2P48431 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX2P48431 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX2P48431 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SOX2P48431 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.15■□□□□ 0.02
SOX2P48431 TSPY26P-202ENST00000565928 3884 ntBASIC15.15■□□□□ 0.02
SOX2P48431 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.15■□□□□ 0.02
SOX2P48431 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SOX2P48431 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SOX2P48431 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 STARP1-201ENST00000397973 869 ntBASIC15.15■□□□□ 0.02
SOX2P48431 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 SAPCD2P2-201ENST00000431719 1174 ntBASIC15.15■□□□□ 0.02
SOX2P48431 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 AL359075.1-203ENST00000462729 1002 ntBASIC15.15■□□□□ 0.02
SOX2P48431 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.15■□□□□ 0.02
SOX2P48431 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SOX2P48431 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.15■□□□□ 0.02
SOX2P48431 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SOX2P48431 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.14■□□□□ 0.01
SOX2P48431 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SOX2P48431 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.14■□□□□ 0.01
SOX2P48431 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SOX2P48431 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SOX2P48431 MYCLP1-201ENST00000372451 1075 ntBASIC15.14■□□□□ 0.01
SOX2P48431 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX2P48431 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms