Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 KRT18P48-201ENST00000434763 852 ntBASIC15.48■□□□□ 0.07
HLA-DPB1P04440 SPDYE13P-201ENST00000445314 798 ntBASIC15.48■□□□□ 0.07
HLA-DPB1P04440 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 TEN1-204ENST00000588202 862 ntTSL 3 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 AL590326.2-201ENST00000625139 305 ntBASIC15.48■□□□□ 0.07
HLA-DPB1P04440 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AL031133.1-201ENST00000406807 723 ntBASIC15.47■□□□□ 0.07
HLA-DPB1P04440 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AL513523.2-202ENST00000427283 2040 ntBASIC15.47■□□□□ 0.07
HLA-DPB1P04440 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AC087388.1-201ENST00000571370 1112 ntBASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AC092068.3-201ENST00000587894 2016 ntBASIC15.47■□□□□ 0.07
HLA-DPB1P04440 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AL139327.4-201ENST00000612362 153 ntBASIC15.47■□□□□ 0.07
HLA-DPB1P04440 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AC093525.9-201ENST00000624961 1746 ntBASIC15.47■□□□□ 0.07
HLA-DPB1P04440 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 RNF216P1-203ENST00000404404 2427 ntBASIC15.47■□□□□ 0.07
HLA-DPB1P04440 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 AC078925.2-201ENST00000624013 1973 ntBASIC15.47■□□□□ 0.07
HLA-DPB1P04440 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HLA-DPB1P04440 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 MIR1224-201ENST00000408193 85 ntBASIC15.46■□□□□ 0.07
HLA-DPB1P04440 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 AP003733.1-201ENST00000491725 852 ntBASIC15.46■□□□□ 0.07
HLA-DPB1P04440 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HLA-DPB1P04440 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms