Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RTN3O95197 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
RTN3O95197 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
RTN3O95197 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RTN3O95197 AC007967.2-201ENST00000432613 625 ntBASIC18.1■□□□□ 0.49
RTN3O95197 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.1■□□□□ 0.49
RTN3O95197 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
RTN3O95197 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.1■□□□□ 0.49
RTN3O95197 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.1■□□□□ 0.49
RTN3O95197 AC023511.2-201ENST00000618803 211 ntBASIC18.1■□□□□ 0.49
RTN3O95197 AC004790.2-201ENST00000623588 572 ntBASIC18.1■□□□□ 0.49
RTN3O95197 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.1■□□□□ 0.49
RTN3O95197 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
RTN3O95197 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.1■□□□□ 0.49
RTN3O95197 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTN3O95197 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
RTN3O95197 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.09■□□□□ 0.49
RTN3O95197 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.09■□□□□ 0.49
RTN3O95197 OR6D1P-202ENST00000641007 5290 ntBASIC18.09■□□□□ 0.49
RTN3O95197 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
RTN3O95197 PI4KAP1-204ENST00000612579 1703 ntBASIC18.09■□□□□ 0.49
RTN3O95197 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.09■□□□□ 0.49
RTN3O95197 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
RTN3O95197 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
RTN3O95197 VN2R19P-201ENST00000442399 1052 ntBASIC18.09■□□□□ 0.49
RTN3O95197 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.09■□□□□ 0.49
RTN3O95197 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.09■□□□□ 0.49
RTN3O95197 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.09■□□□□ 0.49
RTN3O95197 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.09■□□□□ 0.49
RTN3O95197 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.09■□□□□ 0.49
RTN3O95197 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.09■□□□□ 0.49
RTN3O95197 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.09■□□□□ 0.49
RTN3O95197 AC064836.3-201ENST00000607928 673 ntBASIC18.09■□□□□ 0.49
RTN3O95197 AC010654.1-201ENST00000615722 808 ntBASIC18.09■□□□□ 0.49
RTN3O95197 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.09■□□□□ 0.49
RTN3O95197 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.09■□□□□ 0.49
RTN3O95197 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.09■□□□□ 0.49
RTN3O95197 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.09■□□□□ 0.49
RTN3O95197 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
RTN3O95197 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTN3O95197 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.08■□□□□ 0.49
RTN3O95197 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.08■□□□□ 0.49
RTN3O95197 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTN3O95197 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTN3O95197 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTN3O95197 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.08■□□□□ 0.49
RTN3O95197 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTN3O95197 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTN3O95197 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTN3O95197 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RTN3O95197 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTN3O95197 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
RTN3O95197 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.08■□□□□ 0.49
RTN3O95197 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTN3O95197 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTN3O95197 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.08■□□□□ 0.48
RTN3O95197 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
RTN3O95197 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.08■□□□□ 0.48
RTN3O95197 PGAM5P1-201ENST00000518923 814 ntBASIC18.08■□□□□ 0.48
RTN3O95197 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.48
RTN3O95197 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.08■□□□□ 0.48
RTN3O95197 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.08■□□□□ 0.48
RTN3O95197 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTN3O95197 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTN3O95197 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTN3O95197 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
RTN3O95197 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RTN3O95197 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.08■□□□□ 0.48
RTN3O95197 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RTN3O95197 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
RTN3O95197 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 AC016396.2-201ENST00000562575 1417 ntBASIC18.07■□□□□ 0.48
RTN3O95197 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RTN3O95197 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
RTN3O95197 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms