Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC13.87□□□□□ -0.19
HMGB3O15347 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
HMGB3O15347 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
HMGB3O15347 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 AL109923.1-201ENST00000618799 583 ntBASIC13.87□□□□□ -0.19
HMGB3O15347 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.87□□□□□ -0.19
HMGB3O15347 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
HMGB3O15347 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 HOXB1-202ENST00000577092 1414 ntBASIC13.87□□□□□ -0.19
HMGB3O15347 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.87□□□□□ -0.19
HMGB3O15347 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC13.87□□□□□ -0.19
HMGB3O15347 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.86□□□□□ -0.19
HMGB3O15347 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HMGB3O15347 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
HMGB3O15347 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.86□□□□□ -0.19
HMGB3O15347 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.86□□□□□ -0.19
HMGB3O15347 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.86□□□□□ -0.19
HMGB3O15347 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.86□□□□□ -0.19
HMGB3O15347 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
HMGB3O15347 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC13.86□□□□□ -0.19
HMGB3O15347 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC13.86□□□□□ -0.19
HMGB3O15347 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC13.86□□□□□ -0.19
HMGB3O15347 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
HMGB3O15347 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC13.86□□□□□ -0.19
HMGB3O15347 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
HMGB3O15347 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HMGB3O15347 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
HMGB3O15347 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC13.86□□□□□ -0.19
HMGB3O15347 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC13.86□□□□□ -0.19
HMGB3O15347 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HMGB3O15347 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
HMGB3O15347 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
HMGB3O15347 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
HMGB3O15347 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 POU5F2-201ENST00000606183 8418 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
HMGB3O15347 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
HMGB3O15347 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 GLI3-203ENST00000437480 451 ntTSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC13.85□□□□□ -0.19
HMGB3O15347 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC13.85□□□□□ -0.19
HMGB3O15347 SLC25A1P4-201ENST00000567977 778 ntBASIC13.85□□□□□ -0.19
HMGB3O15347 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
HMGB3O15347 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC13.85□□□□□ -0.19
HMGB3O15347 AP000692.2-201ENST00000608391 879 ntBASIC13.85□□□□□ -0.19
HMGB3O15347 AC006449.5-201ENST00000610658 2098 ntBASIC13.85□□□□□ -0.19
HMGB3O15347 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms