Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL20A1Q9P218 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL20A1Q9P218 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 AL121761.2-201ENST00000598007 1648 ntBASIC19.3■□□□□ 0.68
COL20A1Q9P218 AC092053.1-201ENST00000605787 1936 ntBASIC19.3■□□□□ 0.68
COL20A1Q9P218 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 AC112191.1-201ENST00000523689 701 ntBASIC19.3■□□□□ 0.68
COL20A1Q9P218 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 AC022145.2-201ENST00000598203 171 ntBASIC19.3■□□□□ 0.68
COL20A1Q9P218 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.3■□□□□ 0.68
COL20A1Q9P218 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL20A1Q9P218 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL20A1Q9P218 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL20A1Q9P218 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL20A1Q9P218 AL139400.1-201ENST00000366220 510 ntBASIC19.29■□□□□ 0.68
COL20A1Q9P218 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL20A1Q9P218 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL20A1Q9P218 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL20A1Q9P218 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 AL355306.1-201ENST00000415580 579 ntBASIC19.29■□□□□ 0.68
COL20A1Q9P218 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 AP000344.2-201ENST00000512987 629 ntBASIC19.29■□□□□ 0.68
COL20A1Q9P218 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL20A1Q9P218 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL20A1Q9P218 TOP3BP1-201ENST00000420768 1380 ntBASIC19.29■□□□□ 0.68
COL20A1Q9P218 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL20A1Q9P218 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL20A1Q9P218 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.28■□□□□ 0.68
COL20A1Q9P218 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL20A1Q9P218 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL20A1Q9P218 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL20A1Q9P218 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL20A1Q9P218 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL20A1Q9P218 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 AC141586.5-201ENST00000624546 2050 ntBASIC19.28■□□□□ 0.68
COL20A1Q9P218 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL20A1Q9P218 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL20A1Q9P218 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL20A1Q9P218 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL20A1Q9P218 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL20A1Q9P218 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.27■□□□□ 0.68
COL20A1Q9P218 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL20A1Q9P218 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL20A1Q9P218 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL20A1Q9P218 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms