Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
PCDH9Q9HC56 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 UBALD1-205ENST00000590891 2641 ntBASIC17.76■□□□□ 0.43
PCDH9Q9HC56 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 RNF216P1-203ENST00000404404 2427 ntBASIC17.76■□□□□ 0.43
PCDH9Q9HC56 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 AL135999.2-201ENST00000622438 1686 ntBASIC17.76■□□□□ 0.43
PCDH9Q9HC56 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PCDH9Q9HC56 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 TSPY19P-201ENST00000418461 509 ntBASIC17.75■□□□□ 0.43
PCDH9Q9HC56 TSPY18P-201ENST00000441642 509 ntBASIC17.75■□□□□ 0.43
PCDH9Q9HC56 KRT18P31-201ENST00000506277 1292 ntBASIC17.75■□□□□ 0.43
PCDH9Q9HC56 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDH9Q9HC56 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 STK19B-204ENST00000512515 211 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms