Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 AL353779.1-201ENST00000434793 351 ntBASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF541Q9H0D2 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 GNAQP1-201ENST00000444815 1067 ntBASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF541Q9H0D2 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 AL512384.1-201ENST00000406683 331 ntBASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 AC112492.5-201ENST00000421897 457 ntBASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 AC105233.2-201ENST00000523697 349 ntBASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 AF228730.5-201ENST00000530288 346 ntBASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 AC004790.1-201ENST00000612686 536 ntBASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 AL162274.1-201ENST00000617191 1098 ntBASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 FOXO1B-201ENST00000504678 1527 ntBASIC20.33■□□□□ 0.85
ZNF541Q9H0D2 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC20.33■□□□□ 0.84
ZNF541Q9H0D2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.84
ZNF541Q9H0D2 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF541Q9H0D2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF541Q9H0D2 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
ZNF541Q9H0D2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.33■□□□□ 0.84
ZNF541Q9H0D2 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 AC087499.5-201ENST00000452760 1342 ntBASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 MIR658-201ENST00000385210 100 ntBASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 BX323043.1-201ENST00000641006 1765 ntBASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF541Q9H0D2 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms