Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 CRYGEP-201ENST00000412192 528 ntBASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 AC011467.4-201ENST00000594891 528 ntBASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 AC239800.4-201ENST00000603712 296 ntBASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 ELL2P1-201ENST00000413990 1906 ntBASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 AL049757.1-201ENST00000616842 1596 ntBASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 CEND1P1-201ENST00000451006 455 ntBASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 AC122714.2-201ENST00000502787 707 ntBASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 SPCS2P1-201ENST00000561636 679 ntBASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SH3RF1Q7Z6J0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 GPR89P-201ENST00000407924 1495 ntBASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 PRYP5-201ENST00000451909 266 ntBASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 AC093028.1-201ENST00000622998 982 ntBASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SH3RF1Q7Z6J0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 COX20P2-201ENST00000452636 358 ntBASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 AL031432.2-201ENST00000566714 459 ntBASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms