Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 RCN1P2-201ENST00000398357 915 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 DRAXINP1-201ENST00000437611 948 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.64■□□□□ 0.25
FOXA1P55317 TOB2P1-201ENST00000469761 992 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 AC096582.2-201ENST00000510860 516 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
FOXA1P55317 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 AL049597.2-201ENST00000565575 961 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.64■□□□□ 0.25
FOXA1P55317 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
FOXA1P55317 AP002414.4-201ENST00000589764 1148 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.64■□□□□ 0.25
FOXA1P55317 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.64■□□□□ 0.25
FOXA1P55317 NSUN5P1-202ENST00000421140 1535 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 NSUN5P2-203ENST00000457352 1529 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
FOXA1P55317 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA1P55317 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA1P55317 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXA1P55317 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXA1P55317 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.63■□□□□ 0.25
FOXA1P55317 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXA1P55317 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXA1P55317 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
FOXA1P55317 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
FOXA1P55317 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 PCED1CP-201ENST00000419887 785 ntBASIC16.63■□□□□ 0.25
FOXA1P55317 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
FOXA1P55317 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXA1P55317 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA1P55317 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA1P55317 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA1P55317 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA1P55317 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA1P55317 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA1P55317 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
FOXA1P55317 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA1P55317 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
FOXA1P55317 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXA1P55317 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
FOXA1P55317 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms