Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BRCA1P38398 MIR6775-201ENST00000617557 69 ntBASIC20.58■□□□□ 0.88
BRCA1P38398 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.58■□□□□ 0.88
BRCA1P38398 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.58■□□□□ 0.88
BRCA1P38398 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.57■□□□□ 0.88
BRCA1P38398 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRCA1P38398 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.57■□□□□ 0.88
BRCA1P38398 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BRCA1P38398 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRCA1P38398 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.57■□□□□ 0.88
BRCA1P38398 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
BRCA1P38398 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.57■□□□□ 0.88
BRCA1P38398 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRCA1P38398 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.57■□□□□ 0.88
BRCA1P38398 AC011495.1-201ENST00000498085 584 ntBASIC20.57■□□□□ 0.88
BRCA1P38398 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC20.57■□□□□ 0.88
BRCA1P38398 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.57■□□□□ 0.88
BRCA1P38398 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.57■□□□□ 0.88
BRCA1P38398 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
BRCA1P38398 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRCA1P38398 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
BRCA1P38398 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRCA1P38398 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.56■□□□□ 0.88
BRCA1P38398 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRCA1P38398 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRCA1P38398 FLJ13224-201ENST00000313737 1514 ntBASIC20.56■□□□□ 0.88
BRCA1P38398 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.56■□□□□ 0.88
BRCA1P38398 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20.56■□□□□ 0.88
BRCA1P38398 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.56■□□□□ 0.88
BRCA1P38398 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
BRCA1P38398 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 CYP2A7P1-201ENST00000595391 815 ntBASIC20.56■□□□□ 0.88
BRCA1P38398 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
BRCA1P38398 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRCA1P38398 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRCA1P38398 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.56■□□□□ 0.88
BRCA1P38398 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.56■□□□□ 0.88
BRCA1P38398 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRCA1P38398 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRCA1P38398 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRCA1P38398 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.56■□□□□ 0.88
BRCA1P38398 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.56■□□□□ 0.88
BRCA1P38398 KRT18P34-201ENST00000488218 1270 ntBASIC20.56■□□□□ 0.88
BRCA1P38398 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC20.56■□□□□ 0.88
BRCA1P38398 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.56■□□□□ 0.88
BRCA1P38398 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.56■□□□□ 0.88
BRCA1P38398 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRCA1P38398 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
BRCA1P38398 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.55■□□□□ 0.88
BRCA1P38398 AC114501.2-201ENST00000439631 535 ntBASIC20.55■□□□□ 0.88
BRCA1P38398 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.55■□□□□ 0.88
BRCA1P38398 ELK1P1-201ENST00000485699 580 ntBASIC20.55■□□□□ 0.88
BRCA1P38398 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC20.55■□□□□ 0.88
BRCA1P38398 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.55■□□□□ 0.88
BRCA1P38398 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.55■□□□□ 0.88
BRCA1P38398 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC20.55■□□□□ 0.88
BRCA1P38398 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BRCA1P38398 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.55■□□□□ 0.88
BRCA1P38398 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.55■□□□□ 0.88
BRCA1P38398 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.55■□□□□ 0.88
BRCA1P38398 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.54■□□□□ 0.88
BRCA1P38398 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.54■□□□□ 0.88
BRCA1P38398 AC087499.6-201ENST00000411576 835 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
BRCA1P38398 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.54■□□□□ 0.88
BRCA1P38398 AC023310.3-201ENST00000557027 670 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 AC100756.1-201ENST00000562736 682 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 AC138749.3-201ENST00000567691 622 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.54■□□□□ 0.88
BRCA1P38398 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRCA1P38398 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.54■□□□□ 0.88
BRCA1P38398 AC116165.1-201ENST00000611806 668 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRCA1P38398 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRCA1P38398 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRCA1P38398 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.54■□□□□ 0.88
BRCA1P38398 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
BRCA1P38398 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.54■□□□□ 0.88
BRCA1P38398 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BRCA1P38398 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BRCA1P38398 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BRCA1P38398 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms