Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 BX276092.5-203ENST00000456199 560 ntBASIC13.14□□□□□ -0.31
HLA-DMBP28068 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 IGHV3-41-201ENST00000613121 348 ntBASIC13.14□□□□□ -0.31
HLA-DMBP28068 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 AC092171.3-201ENST00000610122 2651 ntBASIC13.14□□□□□ -0.31
HLA-DMBP28068 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.13□□□□□ -0.31
HLA-DMBP28068 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 AC091607.1-201ENST00000490318 1060 ntBASIC13.13□□□□□ -0.31
HLA-DMBP28068 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 AL121672.3-201ENST00000608644 468 ntBASIC13.13□□□□□ -0.31
HLA-DMBP28068 BCL10-202ENST00000620248 774 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 VPS72-207ENST00000640458 689 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HLA-DMBP28068 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 KRT8P10-201ENST00000450021 1447 ntBASIC13.13□□□□□ -0.31
HLA-DMBP28068 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HLA-DMBP28068 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 NFIC-211ENST00000641145 8399 ntBASIC13.12□□□□□ -0.31
HLA-DMBP28068 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 AC008894.3-201ENST00000624324 3103 ntBASIC13.12□□□□□ -0.31
HLA-DMBP28068 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms