Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CD40P25942 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC14.8□□□□□ -0.04
CD40P25942 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.8□□□□□ -0.04
CD40P25942 RHOQP3-201ENST00000437982 621 ntBASIC14.8□□□□□ -0.04
CD40P25942 AC112482.1-201ENST00000492080 688 ntBASIC14.8□□□□□ -0.04
CD40P25942 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.8□□□□□ -0.04
CD40P25942 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.8□□□□□ -0.04
CD40P25942 AL513190.1-201ENST00000621254 727 ntBASIC14.8□□□□□ -0.04
CD40P25942 AC007064.4-201ENST00000637740 555 ntBASIC14.8□□□□□ -0.04
CD40P25942 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.8□□□□□ -0.04
CD40P25942 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CD40P25942 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.8□□□□□ -0.04
CD40P25942 BCAR1-209ENST00000546196 1340 ntBASIC14.8□□□□□ -0.04
CD40P25942 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC14.8□□□□□ -0.04
CD40P25942 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.8□□□□□ -0.04
CD40P25942 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CD40P25942 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.8□□□□□ -0.04
CD40P25942 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CD40P25942 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CD40P25942 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.8□□□□□ -0.04
CD40P25942 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CD40P25942 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
CD40P25942 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CD40P25942 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC14.79□□□□□ -0.04
CD40P25942 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CD40P25942 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.79□□□□□ -0.04
CD40P25942 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.79□□□□□ -0.04
CD40P25942 SLC25A6P2-201ENST00000497974 877 ntBASIC14.79□□□□□ -0.04
CD40P25942 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.79□□□□□ -0.04
CD40P25942 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.79□□□□□ -0.04
CD40P25942 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.79□□□□□ -0.04
CD40P25942 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.79□□□□□ -0.04
CD40P25942 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.79□□□□□ -0.04
CD40P25942 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.79□□□□□ -0.04
CD40P25942 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 AC023141.13-201ENST00000604991 943 ntBASIC14.79□□□□□ -0.04
CD40P25942 AC129492.6-201ENST00000611383 1305 ntBASIC14.79□□□□□ -0.04
CD40P25942 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CD40P25942 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CD40P25942 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.78□□□□□ -0.04
CD40P25942 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.78□□□□□ -0.04
CD40P25942 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC14.78□□□□□ -0.04
CD40P25942 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.78□□□□□ -0.04
CD40P25942 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
CD40P25942 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.78□□□□□ -0.04
CD40P25942 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.78□□□□□ -0.04
CD40P25942 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.78□□□□□ -0.04
CD40P25942 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.78□□□□□ -0.04
CD40P25942 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.78□□□□□ -0.04
CD40P25942 FAM185BP-201ENST00000443595 716 ntBASIC14.78□□□□□ -0.04
CD40P25942 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.78□□□□□ -0.04
CD40P25942 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.78□□□□□ -0.04
CD40P25942 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.78□□□□□ -0.04
CD40P25942 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.78□□□□□ -0.04
CD40P25942 KRT19P2-202ENST00000557173 1012 ntBASIC14.78□□□□□ -0.04
CD40P25942 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.78□□□□□ -0.04
CD40P25942 PDPK2P-202ENST00000562415 1191 ntBASIC14.78□□□□□ -0.04
CD40P25942 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CD40P25942 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.78□□□□□ -0.04
CD40P25942 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CD40P25942 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.78□□□□□ -0.04
CD40P25942 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CD40P25942 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms