Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DPB1P04440 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 CYP2T1P-202ENST00000641596 2535 ntBASIC15.5■□□□□ 0.07
HLA-DPB1P04440 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 ZNF444P1-201ENST00000559497 298 ntBASIC15.5■□□□□ 0.07
HLA-DPB1P04440 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 AC083849.1-201ENST00000615227 514 ntBASIC15.5■□□□□ 0.07
HLA-DPB1P04440 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.5■□□□□ 0.07
HLA-DPB1P04440 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HLA-DPB1P04440 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 KRT18P65-201ENST00000439811 1286 ntBASIC15.49■□□□□ 0.07
HLA-DPB1P04440 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 AC113404.2-201ENST00000507884 177 ntBASIC15.49■□□□□ 0.07
HLA-DPB1P04440 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 KRT8P47-201ENST00000604727 1398 ntBASIC15.49■□□□□ 0.07
HLA-DPB1P04440 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HLA-DPB1P04440 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HLA-DPB1P04440 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms