Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.22■□□□□ 0.35
SHOX2O60902 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.22■□□□□ 0.35
SHOX2O60902 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.22■□□□□ 0.35
SHOX2O60902 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.22■□□□□ 0.35
SHOX2O60902 WWOX-216ENST00000569818 525 ntBASIC17.22■□□□□ 0.35
SHOX2O60902 RN7SL471P-201ENST00000580476 299 ntBASIC17.22■□□□□ 0.35
SHOX2O60902 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 AC112497.1-201ENST00000624824 639 ntBASIC17.22■□□□□ 0.35
SHOX2O60902 AC073648.6-201ENST00000641589 218 ntBASIC17.22■□□□□ 0.35
SHOX2O60902 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
SHOX2O60902 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.22■□□□□ 0.35
SHOX2O60902 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.22■□□□□ 0.35
SHOX2O60902 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHOX2O60902 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
SHOX2O60902 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SHOX2O60902 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.21■□□□□ 0.35
SHOX2O60902 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SHOX2O60902 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SHOX2O60902 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SHOX2O60902 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.21■□□□□ 0.35
SHOX2O60902 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SHOX2O60902 AC113404.2-201ENST00000507884 177 ntBASIC17.21■□□□□ 0.35
SHOX2O60902 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
SHOX2O60902 AC006058.3-201ENST00000606217 1069 ntBASIC17.21■□□□□ 0.35
SHOX2O60902 MIR6786-201ENST00000616843 113 ntBASIC17.21■□□□□ 0.35
SHOX2O60902 CR392000.1-201ENST00000624770 1228 ntBASIC17.21■□□□□ 0.35
SHOX2O60902 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
SHOX2O60902 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC17.21■□□□□ 0.35
SHOX2O60902 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHOX2O60902 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.21■□□□□ 0.35
SHOX2O60902 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SHOX2O60902 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.21■□□□□ 0.34
SHOX2O60902 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SHOX2O60902 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.2■□□□□ 0.34
SHOX2O60902 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.2■□□□□ 0.34
SHOX2O60902 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.2■□□□□ 0.34
SHOX2O60902 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.2■□□□□ 0.34
SHOX2O60902 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SHOX2O60902 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 AC133681.1-201ENST00000465482 601 ntBASIC17.2■□□□□ 0.34
SHOX2O60902 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.2■□□□□ 0.34
SHOX2O60902 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SHOX2O60902 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.2■□□□□ 0.34
SHOX2O60902 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.2■□□□□ 0.34
SHOX2O60902 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SHOX2O60902 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.2■□□□□ 0.34
SHOX2O60902 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHOX2O60902 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SHOX2O60902 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SHOX2O60902 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.19■□□□□ 0.34
SHOX2O60902 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SHOX2O60902 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
SHOX2O60902 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.19■□□□□ 0.34
SHOX2O60902 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.19■□□□□ 0.34
SHOX2O60902 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.19■□□□□ 0.34
SHOX2O60902 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 AC023908.3-201ENST00000564211 3047 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms