Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SART3-203ENST00000546611 1184 ntBASIC18.44■□□□□ 0.54
SIX2Q9NPC8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 MTDHP3-201ENST00000594186 672 ntBASIC18.44■□□□□ 0.54
SIX2Q9NPC8 AL022326.1-202ENST00000641533 845 ntBASIC18.44■□□□□ 0.54
SIX2Q9NPC8 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX2Q9NPC8 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 AL356309.3-201ENST00000624132 1934 ntBASIC18.43■□□□□ 0.54
SIX2Q9NPC8 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 AC012313.10-201ENST00000623509 926 ntBASIC18.43■□□□□ 0.54
SIX2Q9NPC8 AL139288.1-201ENST00000623748 933 ntBASIC18.43■□□□□ 0.54
SIX2Q9NPC8 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX2Q9NPC8 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 AL121772.3-201ENST00000610840 674 ntBASIC18.42■□□□□ 0.54
SIX2Q9NPC8 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 REXO1L6P-202ENST00000619970 1078 ntBASIC18.42■□□□□ 0.54
SIX2Q9NPC8 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms