Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.08■□□□□ 0
NKX3-1Q99801 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC15.08■□□□□ 0
NKX3-1Q99801 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.08■□□□□ 0
NKX3-1Q99801 AC005104.2-201ENST00000427818 678 ntBASIC15.08■□□□□ 0
NKX3-1Q99801 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.08■□□□□ 0
NKX3-1Q99801 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC15.08■□□□□ 0
NKX3-1Q99801 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.08■□□□□ 0
NKX3-1Q99801 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.08■□□□□ 0
NKX3-1Q99801 AP003733.1-201ENST00000491725 852 ntBASIC15.08■□□□□ 0
NKX3-1Q99801 VENTXP5-201ENST00000523979 775 ntBASIC15.08■□□□□ 0
NKX3-1Q99801 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.08■□□□□ 0
NKX3-1Q99801 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC15.08■□□□□ 0
NKX3-1Q99801 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
NKX3-1Q99801 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC15.08■□□□□ 0
NKX3-1Q99801 AL139327.4-201ENST00000612362 153 ntBASIC15.08■□□□□ 0
NKX3-1Q99801 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.08■□□□□ 0
NKX3-1Q99801 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
NKX3-1Q99801 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.08■□□□□ 0
NKX3-1Q99801 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
NKX3-1Q99801 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 AL353692.3-201ENST00000407031 1396 ntBASIC15.08■□□□□ 0
NKX3-1Q99801 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
NKX3-1Q99801 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
NKX3-1Q99801 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
NKX3-1Q99801 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NKX3-1Q99801 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 AC078925.2-201ENST00000624013 1973 ntBASIC15.07■□□□□ 0
NKX3-1Q99801 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
NKX3-1Q99801 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.07■□□□□ 0
NKX3-1Q99801 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.07■□□□□ 0
NKX3-1Q99801 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.07■□□□□ 0
NKX3-1Q99801 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
NKX3-1Q99801 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
NKX3-1Q99801 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.07■□□□□ 0
NKX3-1Q99801 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.07■□□□□ 0
NKX3-1Q99801 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 AC068472.1-201ENST00000474589 881 ntBASIC15.07■□□□□ 0
NKX3-1Q99801 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.07■□□□□ 0
NKX3-1Q99801 YBX1P2-201ENST00000489612 999 ntBASIC15.07■□□□□ 0
NKX3-1Q99801 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
NKX3-1Q99801 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC15.07■□□□□ 0
NKX3-1Q99801 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
NKX3-1Q99801 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
NKX3-1Q99801 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.07■□□□□ 0
NKX3-1Q99801 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.07■□□□□ 0
NKX3-1Q99801 AC016396.2-201ENST00000562575 1417 ntBASIC15.07■□□□□ 0
NKX3-1Q99801 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.07■□□□□ 0
NKX3-1Q99801 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
NKX3-1Q99801 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.06■□□□□ 0
NKX3-1Q99801 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.06■□□□□ 0
NKX3-1Q99801 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
NKX3-1Q99801 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
NKX3-1Q99801 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms