Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.86□□□□□ -0.03
COL12A1Q99715 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.86□□□□□ -0.03
COL12A1Q99715 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.86□□□□□ -0.03
COL12A1Q99715 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL12A1Q99715 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
COL12A1Q99715 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC14.86□□□□□ -0.03
COL12A1Q99715 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 AC087499.5-201ENST00000452760 1342 ntBASIC14.85□□□□□ -0.03
COL12A1Q99715 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.85□□□□□ -0.03
COL12A1Q99715 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.85□□□□□ -0.03
COL12A1Q99715 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.85□□□□□ -0.03
COL12A1Q99715 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.85□□□□□ -0.03
COL12A1Q99715 GOLGA2P4-201ENST00000441462 777 ntBASIC14.85□□□□□ -0.03
COL12A1Q99715 AC087163.2-201ENST00000457299 853 ntBASIC14.85□□□□□ -0.03
COL12A1Q99715 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.85□□□□□ -0.03
COL12A1Q99715 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
COL12A1Q99715 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.85□□□□□ -0.03
COL12A1Q99715 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.85□□□□□ -0.03
COL12A1Q99715 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC14.85□□□□□ -0.03
COL12A1Q99715 AC018529.1-201ENST00000613063 361 ntBASIC14.85□□□□□ -0.03
COL12A1Q99715 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.85□□□□□ -0.03
COL12A1Q99715 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.85□□□□□ -0.03
COL12A1Q99715 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.85□□□□□ -0.03
COL12A1Q99715 AL138918.1-201ENST00000568306 659 ntBASIC14.85□□□□□ -0.03
COL12A1Q99715 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.85□□□□□ -0.03
COL12A1Q99715 AL009183.1-201ENST00000603760 355 ntBASIC14.85□□□□□ -0.03
COL12A1Q99715 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.85□□□□□ -0.03
COL12A1Q99715 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
COL12A1Q99715 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC14.85□□□□□ -0.03
COL12A1Q99715 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL12A1Q99715 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL12A1Q99715 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.84□□□□□ -0.03
COL12A1Q99715 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.84□□□□□ -0.03
COL12A1Q99715 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.84□□□□□ -0.03
COL12A1Q99715 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC14.84□□□□□ -0.03
COL12A1Q99715 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.84□□□□□ -0.03
COL12A1Q99715 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.84□□□□□ -0.03
COL12A1Q99715 MIR4706-201ENST00000582134 82 ntBASIC14.84□□□□□ -0.03
COL12A1Q99715 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL12A1Q99715 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
COL12A1Q99715 KRT223P-202ENST00000449164 1292 ntBASIC14.84□□□□□ -0.03
COL12A1Q99715 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.84□□□□□ -0.03
COL12A1Q99715 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
COL12A1Q99715 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.84□□□□□ -0.03
COL12A1Q99715 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL12A1Q99715 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
COL12A1Q99715 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.84□□□□□ -0.03
COL12A1Q99715 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.84□□□□□ -0.03
COL12A1Q99715 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.84□□□□□ -0.03
COL12A1Q99715 AC011495.1-201ENST00000498085 584 ntBASIC14.84□□□□□ -0.03
COL12A1Q99715 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.84□□□□□ -0.03
COL12A1Q99715 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.84□□□□□ -0.03
COL12A1Q99715 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL12A1Q99715 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL12A1Q99715 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
COL12A1Q99715 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
COL12A1Q99715 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
COL12A1Q99715 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC14.83□□□□□ -0.04
COL12A1Q99715 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 AC104457.1-201ENST00000401024 814 ntBASIC14.83□□□□□ -0.04
COL12A1Q99715 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 IGHV3-62-201ENST00000520057 340 ntBASIC14.83□□□□□ -0.04
COL12A1Q99715 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.83□□□□□ -0.04
COL12A1Q99715 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms