Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 KLF4P1-201ENST00000412782 1185 ntBASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 DDX43P3-201ENST00000441064 443 ntBASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 POLD2P1-201ENST00000511220 997 ntBASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 IGHV3-52-201ENST00000519770 353 ntBASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 AC109462.3-201ENST00000573934 613 ntBASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 MIR1199-201ENST00000621445 119 ntBASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 AC117500.6-201ENST00000624871 588 ntBASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 AL353593.2-201ENST00000602529 1483 ntBASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 IGHV3-22-201ENST00000520721 359 ntBASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 SIGLEC16-201ENST00000599858 1437 ntBASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 AL049757.1-201ENST00000616842 1596 ntBASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 AC073592.4-201ENST00000623827 446 ntBASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 AP002414.3-201ENST00000589352 1468 ntBASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLIP3Q96DZ5 FLJ13224-201ENST00000313737 1514 ntBASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 AC003669.1-201ENST00000334569 611 ntBASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 AC006557.2-201ENST00000592985 1240 ntBASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms