Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.06■□□□□ 0.64
HPS3Q969F9 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HPS3Q969F9 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HPS3Q969F9 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HPS3Q969F9 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.06■□□□□ 0.64
HPS3Q969F9 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HPS3Q969F9 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HPS3Q969F9 EMBP1-201ENST00000458200 901 ntBASIC19.06■□□□□ 0.64
HPS3Q969F9 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.06■□□□□ 0.64
HPS3Q969F9 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.06■□□□□ 0.64
HPS3Q969F9 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.06■□□□□ 0.64
HPS3Q969F9 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HPS3Q969F9 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HPS3Q969F9 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.06■□□□□ 0.64
HPS3Q969F9 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HPS3Q969F9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.06■□□□□ 0.64
HPS3Q969F9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HPS3Q969F9 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.06■□□□□ 0.64
HPS3Q969F9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.06■□□□□ 0.64
HPS3Q969F9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
HPS3Q969F9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HPS3Q969F9 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
HPS3Q969F9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
HPS3Q969F9 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HPS3Q969F9 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.05■□□□□ 0.64
HPS3Q969F9 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.05■□□□□ 0.64
HPS3Q969F9 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
HPS3Q969F9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.05■□□□□ 0.64
HPS3Q969F9 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HPS3Q969F9 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.05■□□□□ 0.64
HPS3Q969F9 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HPS3Q969F9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HPS3Q969F9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.05■□□□□ 0.64
HPS3Q969F9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 AC092171.3-201ENST00000610122 2651 ntBASIC19.04■□□□□ 0.64
HPS3Q969F9 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HPS3Q969F9 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
HPS3Q969F9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.04■□□□□ 0.64
HPS3Q969F9 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.04■□□□□ 0.64
HPS3Q969F9 ACTG1P4-201ENST00000425123 1122 ntBASIC19.04■□□□□ 0.64
HPS3Q969F9 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.04■□□□□ 0.64
HPS3Q969F9 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 SAPCD2P3-201ENST00000455031 850 ntBASIC19.04■□□□□ 0.64
HPS3Q969F9 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.04■□□□□ 0.64
HPS3Q969F9 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.04■□□□□ 0.64
HPS3Q969F9 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.04■□□□□ 0.64
HPS3Q969F9 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.04■□□□□ 0.64
HPS3Q969F9 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.04■□□□□ 0.64
HPS3Q969F9 AL022326.1-202ENST00000641533 845 ntBASIC19.04■□□□□ 0.64
HPS3Q969F9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.04■□□□□ 0.64
HPS3Q969F9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HPS3Q969F9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.04■□□□□ 0.64
HPS3Q969F9 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HPS3Q969F9 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HPS3Q969F9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.03■□□□□ 0.64
HPS3Q969F9 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HPS3Q969F9 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
HPS3Q969F9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HPS3Q969F9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HPS3Q969F9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.03■□□□□ 0.64
HPS3Q969F9 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HPS3Q969F9 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms