Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 AC084018.2-201ENST00000613093 2607 ntBASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 AP005117.1-201ENST00000584346 1413 ntBASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 AC079776.2-201ENST00000641154 1609 ntBASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF549Q6P9A3 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 SIGLEC30P-201ENST00000455569 941 ntBASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 AC124947.2-201ENST00000547118 1133 ntBASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ZNF549Q6P9A3 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF549Q6P9A3 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.08■□□□□ 0.33
ZNF549Q6P9A3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF549Q6P9A3 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.08■□□□□ 0.33
ZNF549Q6P9A3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF549Q6P9A3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 FRMD8P1-201ENST00000440433 1524 ntBASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 HCG4P8-203ENST00000443049 980 ntBASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 AL732292.2-201ENST00000609649 430 ntBASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF549Q6P9A3 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF549Q6P9A3 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF549Q6P9A3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF549Q6P9A3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF549Q6P9A3 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.07■□□□□ 0.32
ZNF549Q6P9A3 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms