Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 PRYP5-201ENST00000451909 266 ntBASIC20.56■□□□□ 0.88
RNF20Q5VTR2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.56■□□□□ 0.88
RNF20Q5VTR2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 TSPY19P-201ENST00000418461 509 ntBASIC20.55■□□□□ 0.88
RNF20Q5VTR2 TSPY18P-201ENST00000441642 509 ntBASIC20.55■□□□□ 0.88
RNF20Q5VTR2 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 AC091304.2-201ENST00000564639 760 ntBASIC20.55■□□□□ 0.88
RNF20Q5VTR2 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.55■□□□□ 0.88
RNF20Q5VTR2 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 AL139288.1-201ENST00000623748 933 ntBASIC20.54■□□□□ 0.88
RNF20Q5VTR2 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 AC004817.3-201ENST00000602957 2129 ntBASIC20.54■□□□□ 0.88
RNF20Q5VTR2 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
RNF20Q5VTR2 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 LINC01711-201ENST00000598340 967 ntBASIC20.53■□□□□ 0.88
RNF20Q5VTR2 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms