Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.84□□□□□ -0.03
AP3S2P59780 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
AP3S2P59780 PAUPAR-201ENST00000630360 2965 ntBASIC14.84□□□□□ -0.03
AP3S2P59780 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.84□□□□□ -0.03
AP3S2P59780 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
AP3S2P59780 KRT8P47-201ENST00000604727 1398 ntBASIC14.84□□□□□ -0.03
AP3S2P59780 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
AP3S2P59780 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.03
AP3S2P59780 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC14.83□□□□□ -0.03
AP3S2P59780 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
AP3S2P59780 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
AP3S2P59780 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.83□□□□□ -0.03
AP3S2P59780 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.83□□□□□ -0.03
AP3S2P59780 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
AP3S2P59780 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
AP3S2P59780 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.83□□□□□ -0.03
AP3S2P59780 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
AP3S2P59780 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.83□□□□□ -0.03
AP3S2P59780 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
AP3S2P59780 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.83□□□□□ -0.03
AP3S2P59780 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.83□□□□□ -0.03
AP3S2P59780 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.83□□□□□ -0.04
AP3S2P59780 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 KRT18P29-201ENST00000397031 1267 ntBASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 NCF1B-203ENST00000435988 1254 ntBASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 AP002490.2-201ENST00000524791 560 ntBASIC14.83□□□□□ -0.04
AP3S2P59780 AC098934.4-201ENST00000564127 592 ntBASIC14.83□□□□□ -0.04
AP3S2P59780 SLC25A1P4-201ENST00000567977 778 ntBASIC14.83□□□□□ -0.04
AP3S2P59780 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC14.83□□□□□ -0.04
AP3S2P59780 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC14.83□□□□□ -0.04
AP3S2P59780 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
AP3S2P59780 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.83□□□□□ -0.04
AP3S2P59780 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
AP3S2P59780 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
AP3S2P59780 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.83□□□□□ -0.04
AP3S2P59780 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
AP3S2P59780 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.82□□□□□ -0.04
AP3S2P59780 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC14.82□□□□□ -0.04
AP3S2P59780 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC14.82□□□□□ -0.04
AP3S2P59780 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC14.82□□□□□ -0.04
AP3S2P59780 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 AC104640.1-201ENST00000562617 2109 ntBASIC14.82□□□□□ -0.04
AP3S2P59780 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC14.82□□□□□ -0.04
AP3S2P59780 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC14.82□□□□□ -0.04
AP3S2P59780 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
AP3S2P59780 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
AP3S2P59780 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms