Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 MIR1238-201ENST00000408483 83 ntBASIC14.35□□□□□ -0.11
HOXA1P49639 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXA1P49639 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXA1P49639 FITM1-202ENST00000559294 800 ntBASIC14.35□□□□□ -0.11
HOXA1P49639 ETFA-216ENST00000560726 942 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXA1P49639 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.35□□□□□ -0.11
HOXA1P49639 AC024243.1-201ENST00000609234 778 ntBASIC14.35□□□□□ -0.11
HOXA1P49639 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA1P49639 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HOXA1P49639 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXA1P49639 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXA1P49639 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.35□□□□□ -0.11
HOXA1P49639 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC14.35□□□□□ -0.11
HOXA1P49639 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HOXA1P49639 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA1P49639 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HOXA1P49639 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA1P49639 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
HOXA1P49639 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.34□□□□□ -0.11
HOXA1P49639 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.34□□□□□ -0.11
HOXA1P49639 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC14.34□□□□□ -0.11
HOXA1P49639 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.34□□□□□ -0.11
HOXA1P49639 DENND3-207ENST00000518347 850 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA1P49639 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA1P49639 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.34□□□□□ -0.11
HOXA1P49639 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC14.34□□□□□ -0.11
HOXA1P49639 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC14.34□□□□□ -0.11
HOXA1P49639 AC010653.2-201ENST00000623505 997 ntBASIC14.34□□□□□ -0.11
HOXA1P49639 AC092865.7-201ENST00000641832 219 ntBASIC14.34□□□□□ -0.11
HOXA1P49639 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA1P49639 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA1P49639 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXA1P49639 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXA1P49639 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXA1P49639 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.33□□□□□ -0.11
HOXA1P49639 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.33□□□□□ -0.11
HOXA1P49639 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.33□□□□□ -0.11
HOXA1P49639 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.33□□□□□ -0.11
HOXA1P49639 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA1P49639 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA1P49639 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 BAALC-201ENST00000297574 801 ntTSL 3 BASIC14.33□□□□□ -0.12
HOXA1P49639 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXA1P49639 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
HOXA1P49639 USP36-216ENST00000589424 970 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXA1P49639 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXA1P49639 Z99916.2-201ENST00000604037 246 ntBASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms