Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 AC105339.3-201ENST00000560043 636 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.34■□□□□ 0.05
CNOT4O95628 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.34■□□□□ 0.05
CNOT4O95628 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.34■□□□□ 0.05
CNOT4O95628 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.34■□□□□ 0.05
CNOT4O95628 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CNOT4O95628 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.34■□□□□ 0.05
CNOT4O95628 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
CNOT4O95628 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 ZNF259P1-201ENST00000407656 1365 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 AC243591.1-201ENST00000452967 1364 ntBASIC15.34■□□□□ 0.05
CNOT4O95628 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.34■□□□□ 0.05
CNOT4O95628 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNOT4O95628 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CNOT4O95628 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CNOT4O95628 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CNOT4O95628 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CNOT4O95628 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CNOT4O95628 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC15.33■□□□□ 0.05
CNOT4O95628 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CNOT4O95628 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.33■□□□□ 0.05
CNOT4O95628 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 AC148477.5-201ENST00000625164 1645 ntBASIC15.33■□□□□ 0.04
CNOT4O95628 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.33■□□□□ 0.04
CNOT4O95628 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CNOT4O95628 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.33■□□□□ 0.04
CNOT4O95628 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.33■□□□□ 0.04
CNOT4O95628 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.33■□□□□ 0.04
CNOT4O95628 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.33■□□□□ 0.04
CNOT4O95628 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.33■□□□□ 0.04
CNOT4O95628 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.33■□□□□ 0.04
CNOT4O95628 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CNOT4O95628 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC15.33■□□□□ 0.04
CNOT4O95628 AC046185.3-201ENST00000623228 1824 ntBASIC15.33■□□□□ 0.04
CNOT4O95628 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.33■□□□□ 0.04
CNOT4O95628 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CNOT4O95628 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CNOT4O95628 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.33■□□□□ 0.04
CNOT4O95628 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNOT4O95628 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.32■□□□□ 0.04
CNOT4O95628 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 AC067852.2-201ENST00000590513 2313 ntBASIC15.32■□□□□ 0.04
CNOT4O95628 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
CNOT4O95628 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.32■□□□□ 0.04
CNOT4O95628 KRT18P27-201ENST00000427733 1299 ntBASIC15.32■□□□□ 0.04
CNOT4O95628 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.32■□□□□ 0.04
CNOT4O95628 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.32■□□□□ 0.04
CNOT4O95628 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.32■□□□□ 0.04
CNOT4O95628 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.32■□□□□ 0.04
CNOT4O95628 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.32■□□□□ 0.04
CNOT4O95628 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CNOT4O95628 MIR1199-201ENST00000621445 119 ntBASIC15.32■□□□□ 0.04
CNOT4O95628 AC004706.3-202ENST00000621574 984 ntBASIC15.32■□□□□ 0.04
CNOT4O95628 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC15.32■□□□□ 0.04
CNOT4O95628 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CNOT4O95628 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.32■□□□□ 0.04
CNOT4O95628 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CNOT4O95628 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.32■□□□□ 0.04
CNOT4O95628 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNOT4O95628 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CNOT4O95628 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms