Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS4BO75351 AC090616.6-201ENST00000582640 721 ntBASIC16.92■□□□□ 0.3
VPS4BO75351 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS4BO75351 IGHV3-41-201ENST00000613121 348 ntBASIC16.92■□□□□ 0.3
VPS4BO75351 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4BO75351 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4BO75351 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4BO75351 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS4BO75351 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS4BO75351 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS4BO75351 HLA-A-201ENST00000376802 1334 ntBASIC16.92■□□□□ 0.3
VPS4BO75351 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS4BO75351 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
VPS4BO75351 AGGF1P2-201ENST00000426656 2106 ntBASIC16.91■□□□□ 0.3
VPS4BO75351 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS4BO75351 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS4BO75351 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 AL353692.3-201ENST00000407031 1396 ntBASIC16.91■□□□□ 0.3
VPS4BO75351 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
VPS4BO75351 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
VPS4BO75351 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
VPS4BO75351 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS4BO75351 COX5BP2-201ENST00000392354 334 ntBASIC16.91■□□□□ 0.3
VPS4BO75351 AC068472.1-201ENST00000474589 881 ntBASIC16.91■□□□□ 0.3
VPS4BO75351 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS4BO75351 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.91■□□□□ 0.3
VPS4BO75351 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS4BO75351 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
VPS4BO75351 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.91■□□□□ 0.3
VPS4BO75351 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.91■□□□□ 0.3
VPS4BO75351 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VPS4BO75351 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4BO75351 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 AC093525.9-201ENST00000624961 1746 ntBASIC16.9■□□□□ 0.3
VPS4BO75351 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4BO75351 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
VPS4BO75351 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
VPS4BO75351 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VPS4BO75351 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS4BO75351 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4BO75351 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS4BO75351 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.9■□□□□ 0.3
VPS4BO75351 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.9■□□□□ 0.3
VPS4BO75351 Z69720.1-201ENST00000601483 472 ntBASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms