Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 MYO15B-237ENST00000642007 4893 ntBASIC13.92□□□□□ -0.18
HMGB3O15347 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.92□□□□□ -0.18
HMGB3O15347 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.91□□□□□ -0.18
HMGB3O15347 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC13.91□□□□□ -0.18
HMGB3O15347 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
HMGB3O15347 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 TP73-203ENST00000357733 4899 ntTSL 5 BASIC13.91□□□□□ -0.18
HMGB3O15347 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.91□□□□□ -0.18
HMGB3O15347 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
HMGB3O15347 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 SERF2-207ENST00000409614 582 ntTSL 2 BASIC13.91□□□□□ -0.18
HMGB3O15347 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC13.91□□□□□ -0.18
HMGB3O15347 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC13.91□□□□□ -0.18
HMGB3O15347 AP003097.1-201ENST00000530657 1135 ntBASIC13.91□□□□□ -0.18
HMGB3O15347 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC13.91□□□□□ -0.18
HMGB3O15347 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC13.91□□□□□ -0.18
HMGB3O15347 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC13.91□□□□□ -0.18
HMGB3O15347 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.91□□□□□ -0.18
HMGB3O15347 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
HMGB3O15347 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.91□□□□□ -0.18
HMGB3O15347 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.91□□□□□ -0.18
HMGB3O15347 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.91□□□□□ -0.18
HMGB3O15347 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.91□□□□□ -0.18
HMGB3O15347 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
HMGB3O15347 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HMGB3O15347 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.9□□□□□ -0.18
HMGB3O15347 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.9□□□□□ -0.18
HMGB3O15347 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.9□□□□□ -0.18
HMGB3O15347 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.9□□□□□ -0.18
HMGB3O15347 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
HMGB3O15347 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC13.9□□□□□ -0.18
HMGB3O15347 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 FDX2-207ENST00000494368 584 ntTSL 4 BASIC13.9□□□□□ -0.18
HMGB3O15347 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 AC026271.3-201ENST00000571884 352 ntBASIC13.9□□□□□ -0.18
HMGB3O15347 AC124016.1-201ENST00000609552 612 ntBASIC13.9□□□□□ -0.18
HMGB3O15347 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 MIR6786-201ENST00000616843 113 ntBASIC13.9□□□□□ -0.18
HMGB3O15347 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.18
HMGB3O15347 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HMGB3O15347 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HMGB3O15347 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.9□□□□□ -0.18
HMGB3O15347 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HMGB3O15347 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC13.9□□□□□ -0.18
HMGB3O15347 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
HMGB3O15347 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
HMGB3O15347 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC13.9□□□□□ -0.19
HMGB3O15347 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
HMGB3O15347 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms