Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 AL139384.1-201ENST00000612143 3047 ntBASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 LINC02199-201ENST00000506655 2702 ntBASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 TSPY5P-201ENST00000426936 936 ntBASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 HOMER2P1-201ENST00000455653 964 ntBASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 AC122714.2-201ENST00000502787 707 ntBASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 AC111152.3-201ENST00000569699 673 ntBASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 AC005363.2-201ENST00000618631 242 ntBASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 AC125634.1-201ENST00000438758 1403 ntBASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 KRT8P10-201ENST00000450021 1447 ntBASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TRIM49D1C9J1S8 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 AL662844.4-201ENST00000606367 2838 ntBASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 RNF152P1-201ENST00000397754 604 ntBASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 AC093827.2-201ENST00000512654 315 ntBASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM49D1C9J1S8 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 AC073508.3-201ENST00000619697 1419 ntBASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM49D1C9J1S8 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 SPDYE13P-201ENST00000445314 798 ntBASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms