Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
MMP28Q9H239 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
MMP28Q9H239 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MMP28Q9H239 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.11■□□□□ 0.97
MMP28Q9H239 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.11■□□□□ 0.97
MMP28Q9H239 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MMP28Q9H239 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MMP28Q9H239 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MMP28Q9H239 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.11■□□□□ 0.97
MMP28Q9H239 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MMP28Q9H239 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MMP28Q9H239 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MMP28Q9H239 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
MMP28Q9H239 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MMP28Q9H239 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
MMP28Q9H239 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MMP28Q9H239 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
MMP28Q9H239 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.09■□□□□ 0.97
MMP28Q9H239 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP28Q9H239 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP28Q9H239 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.09■□□□□ 0.97
MMP28Q9H239 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MMP28Q9H239 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP28Q9H239 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.08■□□□□ 0.97
MMP28Q9H239 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP28Q9H239 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP28Q9H239 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP28Q9H239 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MMP28Q9H239 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
MMP28Q9H239 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
MMP28Q9H239 AC022211.4-201ENST00000625094 2161 ntBASIC21.07■□□□□ 0.96
MMP28Q9H239 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MMP28Q9H239 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.07■□□□□ 0.96
MMP28Q9H239 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.07■□□□□ 0.96
MMP28Q9H239 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MMP28Q9H239 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MMP28Q9H239 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP28Q9H239 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.06■□□□□ 0.96
MMP28Q9H239 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.06■□□□□ 0.96
MMP28Q9H239 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MMP28Q9H239 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MMP28Q9H239 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
MMP28Q9H239 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
MMP28Q9H239 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
MMP28Q9H239 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MMP28Q9H239 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MMP28Q9H239 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MMP28Q9H239 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MMP28Q9H239 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MMP28Q9H239 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MMP28Q9H239 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MMP28Q9H239 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
MMP28Q9H239 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP28Q9H239 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.03■□□□□ 0.96
MMP28Q9H239 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP28Q9H239 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP28Q9H239 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP28Q9H239 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.02■□□□□ 0.96
MMP28Q9H239 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.02■□□□□ 0.96
MMP28Q9H239 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
MMP28Q9H239 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP28Q9H239 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MMP28Q9H239 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
MMP28Q9H239 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.02■□□□□ 0.96
MMP28Q9H239 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.02■□□□□ 0.96
MMP28Q9H239 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.02■□□□□ 0.96
MMP28Q9H239 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
MMP28Q9H239 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
MMP28Q9H239 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
MMP28Q9H239 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP28Q9H239 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
MMP28Q9H239 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
MMP28Q9H239 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.01■□□□□ 0.95
MMP28Q9H239 DUX4L29-201ENST00000425409 679 ntBASIC21.01■□□□□ 0.95
MMP28Q9H239 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.01■□□□□ 0.95
MMP28Q9H239 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP28Q9H239 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.01■□□□□ 0.95
MMP28Q9H239 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP28Q9H239 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
MMP28Q9H239 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
MMP28Q9H239 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.01■□□□□ 0.95
MMP28Q9H239 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21■□□□□ 0.95
MMP28Q9H239 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 LINC00273-201ENST00000539813 1452 ntBASIC21■□□□□ 0.95
MMP28Q9H239 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MMP28Q9H239 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP28Q9H239 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.99■□□□□ 0.95
MMP28Q9H239 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP28Q9H239 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP28Q9H239 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP28Q9H239 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP28Q9H239 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms