Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
NEK1Q96PY6 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.73■■■□□ 2.19
NEK1Q96PY6 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
NEK1Q96PY6 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
NEK1Q96PY6 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
NEK1Q96PY6 MIR3960-201ENST00000583311 91 ntBASIC28.72■■■□□ 2.19
NEK1Q96PY6 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
NEK1Q96PY6 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
NEK1Q96PY6 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
NEK1Q96PY6 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
NEK1Q96PY6 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.71■■■□□ 2.19
NEK1Q96PY6 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC28.71■■■□□ 2.19
NEK1Q96PY6 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.71■■■□□ 2.19
NEK1Q96PY6 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC28.71■■■□□ 2.19
NEK1Q96PY6 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
NEK1Q96PY6 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC28.71■■■□□ 2.19
NEK1Q96PY6 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
NEK1Q96PY6 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
NEK1Q96PY6 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC28.7■■■□□ 2.19
NEK1Q96PY6 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.7■■■□□ 2.18
NEK1Q96PY6 ABHD17AP3-201ENST00000503096 1137 ntBASIC28.7■■■□□ 2.18
NEK1Q96PY6 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.69■■■□□ 2.18
NEK1Q96PY6 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
NEK1Q96PY6 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
NEK1Q96PY6 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
NEK1Q96PY6 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
NEK1Q96PY6 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
NEK1Q96PY6 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
NEK1Q96PY6 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
NEK1Q96PY6 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
NEK1Q96PY6 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
NEK1Q96PY6 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
NEK1Q96PY6 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
NEK1Q96PY6 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
NEK1Q96PY6 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC28.67■■■□□ 2.18
NEK1Q96PY6 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC28.67■■■□□ 2.18
NEK1Q96PY6 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
NEK1Q96PY6 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
NEK1Q96PY6 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
NEK1Q96PY6 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
NEK1Q96PY6 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC28.65■■■□□ 2.18
NEK1Q96PY6 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
NEK1Q96PY6 AC096887.2-201ENST00000623443 1957 ntBASIC28.64■■■□□ 2.18
NEK1Q96PY6 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
NEK1Q96PY6 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.64■■■□□ 2.18
NEK1Q96PY6 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
NEK1Q96PY6 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC28.64■■■□□ 2.18
NEK1Q96PY6 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC28.64■■■□□ 2.18
NEK1Q96PY6 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC28.64■■■□□ 2.17
NEK1Q96PY6 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
NEK1Q96PY6 RP9P-202ENST00000450133 1212 ntBASIC28.63■■■□□ 2.17
NEK1Q96PY6 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC28.63■■■□□ 2.17
NEK1Q96PY6 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC28.63■■■□□ 2.17
NEK1Q96PY6 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
NEK1Q96PY6 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
NEK1Q96PY6 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC28.62■■■□□ 2.17
NEK1Q96PY6 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28.62■■■□□ 2.17
NEK1Q96PY6 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
NEK1Q96PY6 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
NEK1Q96PY6 AC007029.1-201ENST00000604183 313 ntBASIC28.61■■■□□ 2.17
NEK1Q96PY6 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC28.61■■■□□ 2.17
NEK1Q96PY6 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28.61■■■□□ 2.17
NEK1Q96PY6 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
NEK1Q96PY6 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
NEK1Q96PY6 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
NEK1Q96PY6 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC28.6■■■□□ 2.17
NEK1Q96PY6 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC28.6■■■□□ 2.17
NEK1Q96PY6 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC28.6■■■□□ 2.17
NEK1Q96PY6 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
NEK1Q96PY6 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
NEK1Q96PY6 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
NEK1Q96PY6 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
NEK1Q96PY6 AC093536.1-201ENST00000569153 554 ntBASIC28.58■■■□□ 2.17
NEK1Q96PY6 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
NEK1Q96PY6 RNF126P1-201ENST00000567452 1320 ntBASIC28.58■■■□□ 2.17
NEK1Q96PY6 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC28.58■■■□□ 2.17
NEK1Q96PY6 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.16
NEK1Q96PY6 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC28.57■■■□□ 2.16
NEK1Q96PY6 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
NEK1Q96PY6 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.57■■■□□ 2.16
NEK1Q96PY6 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC28.57■■■□□ 2.16
NEK1Q96PY6 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC28.57■■■□□ 2.16
NEK1Q96PY6 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
NEK1Q96PY6 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC28.56■■■□□ 2.16
NEK1Q96PY6 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
NEK1Q96PY6 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC28.56■■■□□ 2.16
NEK1Q96PY6 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC28.56■■■□□ 2.16
NEK1Q96PY6 AC020928.2-201ENST00000588717 2197 ntBASIC28.56■■■□□ 2.16
NEK1Q96PY6 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
NEK1Q96PY6 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
NEK1Q96PY6 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
NEK1Q96PY6 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
NEK1Q96PY6 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
NEK1Q96PY6 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
NEK1Q96PY6 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
NEK1Q96PY6 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
NEK1Q96PY6 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC28.54■■■□□ 2.16
NEK1Q96PY6 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
NEK1Q96PY6 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
NEK1Q96PY6 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms