Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
RNF139Q8WU17 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.42■■□□□ 1.66
RNF139Q8WU17 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
RNF139Q8WU17 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
RNF139Q8WU17 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
RNF139Q8WU17 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.41■■□□□ 1.66
RNF139Q8WU17 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
RNF139Q8WU17 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC25.41■■□□□ 1.66
RNF139Q8WU17 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
RNF139Q8WU17 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
RNF139Q8WU17 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RNF139Q8WU17 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC25.4■■□□□ 1.66
RNF139Q8WU17 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
RNF139Q8WU17 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC25.4■■□□□ 1.66
RNF139Q8WU17 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC25.4■■□□□ 1.66
RNF139Q8WU17 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
RNF139Q8WU17 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.39■■□□□ 1.66
RNF139Q8WU17 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.39■■□□□ 1.65
RNF139Q8WU17 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.65
RNF139Q8WU17 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
RNF139Q8WU17 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.38■■□□□ 1.65
RNF139Q8WU17 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
RNF139Q8WU17 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
RNF139Q8WU17 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
RNF139Q8WU17 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
RNF139Q8WU17 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.37■■□□□ 1.65
RNF139Q8WU17 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
RNF139Q8WU17 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
RNF139Q8WU17 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
RNF139Q8WU17 AC129492.7-201ENST00000622992 756 ntBASIC25.37■■□□□ 1.65
RNF139Q8WU17 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
RNF139Q8WU17 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
RNF139Q8WU17 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.36■■□□□ 1.65
RNF139Q8WU17 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
RNF139Q8WU17 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RNF139Q8WU17 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.35■■□□□ 1.65
RNF139Q8WU17 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RNF139Q8WU17 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.34■■□□□ 1.65
RNF139Q8WU17 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
RNF139Q8WU17 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.34■■□□□ 1.65
RNF139Q8WU17 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
RNF139Q8WU17 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
RNF139Q8WU17 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RNF139Q8WU17 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RNF139Q8WU17 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RNF139Q8WU17 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.33■■□□□ 1.65
RNF139Q8WU17 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
RNF139Q8WU17 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
RNF139Q8WU17 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RNF139Q8WU17 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.64
RNF139Q8WU17 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC25.32■■□□□ 1.64
RNF139Q8WU17 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
RNF139Q8WU17 AC004987.1-201ENST00000428627 508 ntBASIC25.32■■□□□ 1.64
RNF139Q8WU17 ATP5G2P3-201ENST00000429083 425 ntBASIC25.32■■□□□ 1.64
RNF139Q8WU17 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RNF139Q8WU17 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RNF139Q8WU17 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RNF139Q8WU17 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RNF139Q8WU17 TSPY13P-201ENST00000338964 914 ntBASIC25.31■■□□□ 1.64
RNF139Q8WU17 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC25.31■■□□□ 1.64
RNF139Q8WU17 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RNF139Q8WU17 AC018755.3-202ENST00000596210 929 ntBASIC25.31■■□□□ 1.64
RNF139Q8WU17 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
RNF139Q8WU17 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
RNF139Q8WU17 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RNF139Q8WU17 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
RNF139Q8WU17 DUX4L9-201ENST00000449051 1259 ntBASIC25.3■■□□□ 1.64
RNF139Q8WU17 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
RNF139Q8WU17 AL033527.3-201ENST00000566366 1196 ntBASIC25.3■■□□□ 1.64
RNF139Q8WU17 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
RNF139Q8WU17 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.3■■□□□ 1.64
RNF139Q8WU17 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RNF139Q8WU17 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RNF139Q8WU17 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC25.29■■□□□ 1.64
RNF139Q8WU17 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RNF139Q8WU17 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC25.29■■□□□ 1.64
RNF139Q8WU17 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.28■■□□□ 1.64
RNF139Q8WU17 DUX4L18-201ENST00000553347 1267 ntBASIC25.28■■□□□ 1.64
RNF139Q8WU17 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
RNF139Q8WU17 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.28■■□□□ 1.64
RNF139Q8WU17 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.27■■□□□ 1.64
RNF139Q8WU17 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RNF139Q8WU17 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RNF139Q8WU17 SPCS2P3-201ENST00000500401 656 ntBASIC25.27■■□□□ 1.64
RNF139Q8WU17 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
RNF139Q8WU17 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RNF139Q8WU17 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RNF139Q8WU17 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC25.26■■□□□ 1.63
RNF139Q8WU17 MIR6765-201ENST00000614092 87 ntBASIC25.26■■□□□ 1.63
RNF139Q8WU17 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RNF139Q8WU17 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RNF139Q8WU17 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.25■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms