Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.72■□□□□ 0.43
COL7A1Q02388 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC17.71■□□□□ 0.43
COL7A1Q02388 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.71■□□□□ 0.43
COL7A1Q02388 AC133561.4-201ENST00000566112 224 ntBASIC17.71■□□□□ 0.43
COL7A1Q02388 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC17.71■□□□□ 0.43
COL7A1Q02388 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL7A1Q02388 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL7A1Q02388 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL7A1Q02388 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL7A1Q02388 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.71■□□□□ 0.43
COL7A1Q02388 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL7A1Q02388 AL136116.3-201ENST00000402907 1138 ntBASIC17.71■□□□□ 0.43
COL7A1Q02388 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL7A1Q02388 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
COL7A1Q02388 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC17.7■□□□□ 0.42
COL7A1Q02388 SUDS3P1-201ENST00000505831 966 ntBASIC17.7■□□□□ 0.42
COL7A1Q02388 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.7■□□□□ 0.42
COL7A1Q02388 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.7■□□□□ 0.42
COL7A1Q02388 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL7A1Q02388 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL7A1Q02388 AC021242.3-201ENST00000607598 1377 ntBASIC17.7■□□□□ 0.42
COL7A1Q02388 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC17.7■□□□□ 0.42
COL7A1Q02388 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.7■□□□□ 0.42
COL7A1Q02388 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL7A1Q02388 WHAMMP3-201ENST00000611636 1609 ntBASIC17.7■□□□□ 0.42
COL7A1Q02388 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL7A1Q02388 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL7A1Q02388 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.69■□□□□ 0.42
COL7A1Q02388 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC17.69■□□□□ 0.42
COL7A1Q02388 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL7A1Q02388 AC096631.2-201ENST00000436136 790 ntBASIC17.69■□□□□ 0.42
COL7A1Q02388 AC135279.3-201ENST00000610945 1311 ntBASIC17.69■□□□□ 0.42
COL7A1Q02388 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.68■□□□□ 0.42
COL7A1Q02388 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.68■□□□□ 0.42
COL7A1Q02388 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.68■□□□□ 0.42
COL7A1Q02388 AC104564.3-201ENST00000582367 638 ntBASIC17.68■□□□□ 0.42
COL7A1Q02388 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL7A1Q02388 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL7A1Q02388 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL7A1Q02388 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC17.67■□□□□ 0.42
COL7A1Q02388 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
COL7A1Q02388 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL7A1Q02388 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL7A1Q02388 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC17.67■□□□□ 0.42
COL7A1Q02388 AL512631.2-201ENST00000604634 923 ntBASIC17.67■□□□□ 0.42
COL7A1Q02388 AC092028.1-203ENST00000608262 953 ntBASIC17.67■□□□□ 0.42
COL7A1Q02388 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL7A1Q02388 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL7A1Q02388 KRT18P24-201ENST00000344739 1156 ntBASIC17.67■□□□□ 0.42
COL7A1Q02388 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC17.67■□□□□ 0.42
COL7A1Q02388 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC17.67■□□□□ 0.42
COL7A1Q02388 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
COL7A1Q02388 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC17.66■□□□□ 0.42
COL7A1Q02388 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
COL7A1Q02388 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC17.65■□□□□ 0.42
COL7A1Q02388 AC137630.3-201ENST00000607245 391 ntBASIC17.65■□□□□ 0.42
COL7A1Q02388 AL117332.1-201ENST00000622628 974 ntBASIC17.65■□□□□ 0.42
COL7A1Q02388 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL7A1Q02388 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.65■□□□□ 0.42
COL7A1Q02388 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL7A1Q02388 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC17.64■□□□□ 0.41
COL7A1Q02388 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL7A1Q02388 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
COL7A1Q02388 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL7A1Q02388 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL7A1Q02388 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
COL7A1Q02388 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL7A1Q02388 TSPY9P-201ENST00000440215 945 ntBASIC17.64■□□□□ 0.41
COL7A1Q02388 TSPY11P-201ENST00000442607 1045 ntBASIC17.64■□□□□ 0.41
COL7A1Q02388 AL139393.2-201ENST00000608721 2025 ntBASIC17.64■□□□□ 0.41
COL7A1Q02388 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL7A1Q02388 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
COL7A1Q02388 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL7A1Q02388 GUK1-205ENST00000366722 850 ntTSL 3 BASIC17.63■□□□□ 0.41
COL7A1Q02388 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.63■□□□□ 0.41
COL7A1Q02388 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC17.62■□□□□ 0.41
COL7A1Q02388 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL7A1Q02388 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL7A1Q02388 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL7A1Q02388 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL7A1Q02388 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
COL7A1Q02388 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL7A1Q02388 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC17.62■□□□□ 0.41
COL7A1Q02388 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.61■□□□□ 0.41
COL7A1Q02388 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL7A1Q02388 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL7A1Q02388 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.61■□□□□ 0.41
COL7A1Q02388 MIR3621-201ENST00000580529 85 ntBASIC17.61■□□□□ 0.41
COL7A1Q02388 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL7A1Q02388 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL7A1Q02388 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL7A1Q02388 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC17.61■□□□□ 0.41
COL7A1Q02388 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL7A1Q02388 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
COL7A1Q02388 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL7A1Q02388 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL7A1Q02388 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL7A1Q02388 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL7A1Q02388 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL7A1Q02388 TK2-202ENST00000417693 1046 ntTSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms