Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PEX3P56589 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PEX3P56589 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PEX3P56589 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.77■■□□□ 1.88
PEX3P56589 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.77■■□□□ 1.88
PEX3P56589 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC26.77■■□□□ 1.88
PEX3P56589 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.76■■□□□ 1.88
PEX3P56589 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
PEX3P56589 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PEX3P56589 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
PEX3P56589 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
PEX3P56589 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
PEX3P56589 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PEX3P56589 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.73■■□□□ 1.87
PEX3P56589 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PEX3P56589 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
PEX3P56589 AC129492.7-201ENST00000622992 756 ntBASIC26.73■■□□□ 1.87
PEX3P56589 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
PEX3P56589 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
PEX3P56589 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
PEX3P56589 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
PEX3P56589 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
PEX3P56589 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
PEX3P56589 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PEX3P56589 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.72■■□□□ 1.87
PEX3P56589 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PEX3P56589 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.71■■□□□ 1.87
PEX3P56589 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PEX3P56589 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
PEX3P56589 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PEX3P56589 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
PEX3P56589 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PEX3P56589 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PEX3P56589 SPCS2P3-201ENST00000500401 656 ntBASIC26.71■■□□□ 1.87
PEX3P56589 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.71■■□□□ 1.87
PEX3P56589 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
PEX3P56589 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PEX3P56589 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.71■■□□□ 1.87
PEX3P56589 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.71■■□□□ 1.87
PEX3P56589 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
PEX3P56589 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
PEX3P56589 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
PEX3P56589 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.86
PEX3P56589 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.69■■□□□ 1.86
PEX3P56589 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
PEX3P56589 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
PEX3P56589 AC012354.3-201ENST00000623734 483 ntBASIC26.69■■□□□ 1.86
PEX3P56589 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
PEX3P56589 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PEX3P56589 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PEX3P56589 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PEX3P56589 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PEX3P56589 DUX4L9-201ENST00000449051 1259 ntBASIC26.68■■□□□ 1.86
PEX3P56589 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.68■■□□□ 1.86
PEX3P56589 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC26.68■■□□□ 1.86
PEX3P56589 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC26.68■■□□□ 1.86
PEX3P56589 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PEX3P56589 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PEX3P56589 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
PEX3P56589 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.67■■□□□ 1.86
PEX3P56589 AC004987.1-201ENST00000428627 508 ntBASIC26.66■■□□□ 1.86
PEX3P56589 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
PEX3P56589 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PEX3P56589 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
PEX3P56589 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.65■■□□□ 1.86
PEX3P56589 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.65■■□□□ 1.86
PEX3P56589 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PEX3P56589 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.65■■□□□ 1.86
PEX3P56589 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
PEX3P56589 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
PEX3P56589 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.65■■□□□ 1.86
PEX3P56589 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.64■■□□□ 1.86
PEX3P56589 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.64■■□□□ 1.86
PEX3P56589 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.64■■□□□ 1.86
PEX3P56589 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.64■■□□□ 1.86
PEX3P56589 ATP5G2P3-201ENST00000429083 425 ntBASIC26.64■■□□□ 1.86
PEX3P56589 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
PEX3P56589 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.64■■□□□ 1.85
PEX3P56589 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.63■■□□□ 1.85
PEX3P56589 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
PEX3P56589 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PEX3P56589 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.63■■□□□ 1.85
PEX3P56589 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
PEX3P56589 ERN1-208ENST00000606895 2068 ntBASIC26.62■■□□□ 1.85
PEX3P56589 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PEX3P56589 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PEX3P56589 DUX4L18-201ENST00000553347 1267 ntBASIC26.62■■□□□ 1.85
PEX3P56589 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
PEX3P56589 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.62■■□□□ 1.85
PEX3P56589 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PEX3P56589 AC092803.2-201ENST00000564287 1899 ntBASIC26.62■■□□□ 1.85
PEX3P56589 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
PEX3P56589 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
PEX3P56589 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
PEX3P56589 AL033527.3-201ENST00000566366 1196 ntBASIC26.61■■□□□ 1.85
PEX3P56589 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
PEX3P56589 AC018755.3-202ENST00000596210 929 ntBASIC26.61■■□□□ 1.85
PEX3P56589 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.61■■□□□ 1.85
PEX3P56589 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
PEX3P56589 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.61■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms