Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 WHAMMP3-201ENST00000611636 1609 ntBASIC18.04■□□□□ 0.48
FOXA3P55318 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.04■□□□□ 0.48
FOXA3P55318 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
FOXA3P55318 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
FOXA3P55318 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC18.03■□□□□ 0.48
FOXA3P55318 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC18.03■□□□□ 0.48
FOXA3P55318 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.03■□□□□ 0.48
FOXA3P55318 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA3P55318 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA3P55318 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
FOXA3P55318 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
FOXA3P55318 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA3P55318 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
FOXA3P55318 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA3P55318 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA3P55318 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA3P55318 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA3P55318 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC18.01■□□□□ 0.47
FOXA3P55318 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
FOXA3P55318 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA3P55318 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.01■□□□□ 0.47
FOXA3P55318 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18■□□□□ 0.47
FOXA3P55318 EI24-212ENST00000615917 1407 ntTSL 2 BASIC18■□□□□ 0.47
FOXA3P55318 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA3P55318 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18■□□□□ 0.47
FOXA3P55318 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18■□□□□ 0.47
FOXA3P55318 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
FOXA3P55318 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
FOXA3P55318 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18■□□□□ 0.47
FOXA3P55318 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA3P55318 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA3P55318 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA3P55318 CAHM-201ENST00000604200 896 ntBASIC17.99■□□□□ 0.47
FOXA3P55318 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA3P55318 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA3P55318 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
FOXA3P55318 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA3P55318 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC17.98■□□□□ 0.47
FOXA3P55318 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC17.98■□□□□ 0.47
FOXA3P55318 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC17.98■□□□□ 0.47
FOXA3P55318 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXA3P55318 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.97■□□□□ 0.47
FOXA3P55318 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA3P55318 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA3P55318 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA3P55318 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA3P55318 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA3P55318 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA3P55318 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXA3P55318 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA3P55318 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC17.96■□□□□ 0.46
FOXA3P55318 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA3P55318 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA3P55318 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA3P55318 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
FOXA3P55318 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
FOXA3P55318 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA3P55318 EED-207ENST00000528180 1745 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXA3P55318 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA3P55318 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA3P55318 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA3P55318 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA3P55318 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC17.94■□□□□ 0.46
FOXA3P55318 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA3P55318 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA3P55318 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA3P55318 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA3P55318 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
FOXA3P55318 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
FOXA3P55318 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA3P55318 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA3P55318 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.93■□□□□ 0.46
FOXA3P55318 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA3P55318 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA3P55318 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA3P55318 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA3P55318 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA3P55318 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA3P55318 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA3P55318 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA3P55318 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA3P55318 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA3P55318 AC108673.1-201ENST00000510422 1159 ntBASIC17.91■□□□□ 0.46
FOXA3P55318 RPS2-209ENST00000529806 993 ntTSL 3 BASIC17.91■□□□□ 0.46
FOXA3P55318 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA3P55318 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC17.91■□□□□ 0.46
FOXA3P55318 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
FOXA3P55318 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms