Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CDH6P55285 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CDH6P55285 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CDH6P55285 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CDH6P55285 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CDH6P55285 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDH6P55285 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.16■■□□□ 1.62
CDH6P55285 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDH6P55285 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.16■■□□□ 1.62
CDH6P55285 AC025884.2-201ENST00000553429 711 ntBASIC25.16■■□□□ 1.62
CDH6P55285 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDH6P55285 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDH6P55285 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CDH6P55285 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25.15■■□□□ 1.62
CDH6P55285 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
CDH6P55285 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CDH6P55285 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.15■■□□□ 1.62
CDH6P55285 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDH6P55285 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.15■■□□□ 1.62
CDH6P55285 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDH6P55285 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
CDH6P55285 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDH6P55285 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CDH6P55285 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDH6P55285 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDH6P55285 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDH6P55285 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CDH6P55285 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CDH6P55285 SMPD5-203ENST00000639008 1464 ntBASIC25.13■■□□□ 1.61
CDH6P55285 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDH6P55285 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC25.12■■□□□ 1.61
CDH6P55285 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CDH6P55285 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CDH6P55285 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CDH6P55285 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.12■■□□□ 1.61
CDH6P55285 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CDH6P55285 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
CDH6P55285 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDH6P55285 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDH6P55285 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
CDH6P55285 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC25.11■■□□□ 1.61
CDH6P55285 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDH6P55285 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
CDH6P55285 ECEL1P2-201ENST00000461596 1295 ntBASIC25.11■■□□□ 1.61
CDH6P55285 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.11■■□□□ 1.61
CDH6P55285 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CDH6P55285 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.11■■□□□ 1.61
CDH6P55285 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDH6P55285 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDH6P55285 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.1■■□□□ 1.61
CDH6P55285 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDH6P55285 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CDH6P55285 AC020928.2-201ENST00000588717 2197 ntBASIC25.1■■□□□ 1.61
CDH6P55285 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.09■■□□□ 1.61
CDH6P55285 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
CDH6P55285 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
CDH6P55285 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CDH6P55285 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
CDH6P55285 AC096887.2-201ENST00000623443 1957 ntBASIC25.08■■□□□ 1.61
CDH6P55285 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CDH6P55285 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC25.08■■□□□ 1.61
CDH6P55285 MIR3960-201ENST00000583311 91 ntBASIC25.08■■□□□ 1.61
CDH6P55285 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.08■■□□□ 1.61
CDH6P55285 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.08■■□□□ 1.6
CDH6P55285 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.6
CDH6P55285 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CDH6P55285 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CDH6P55285 GPX1-201ENST00000419349 1106 ntBASIC25.07■■□□□ 1.6
CDH6P55285 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
CDH6P55285 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
CDH6P55285 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
CDH6P55285 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.06■■□□□ 1.6
CDH6P55285 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.06■■□□□ 1.6
CDH6P55285 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CDH6P55285 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
CDH6P55285 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.05■■□□□ 1.6
CDH6P55285 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CDH6P55285 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CDH6P55285 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.04■■□□□ 1.6
CDH6P55285 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC25.04■■□□□ 1.6
CDH6P55285 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
CDH6P55285 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.04■■□□□ 1.6
CDH6P55285 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CDH6P55285 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.04■■□□□ 1.6
CDH6P55285 ABHD17AP3-201ENST00000503096 1137 ntBASIC25.04■■□□□ 1.6
CDH6P55285 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CDH6P55285 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.04■■□□□ 1.6
CDH6P55285 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CDH6P55285 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CDH6P55285 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.03■■□□□ 1.6
CDH6P55285 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CDH6P55285 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.02■■□□□ 1.6
CDH6P55285 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CDH6P55285 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.02■■□□□ 1.6
CDH6P55285 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CDH6P55285 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CDH6P55285 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CDH6P55285 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CDH6P55285 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CDH6P55285 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms