Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SOX2P48431 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SOX2P48431 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SOX2P48431 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
SOX2P48431 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.11■□□□□ 0.97
SOX2P48431 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX2P48431 AC096887.2-201ENST00000623443 1957 ntBASIC21.1■□□□□ 0.97
SOX2P48431 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX2P48431 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
SOX2P48431 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SOX2P48431 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.1■□□□□ 0.97
SOX2P48431 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX2P48431 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX2P48431 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX2P48431 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX2P48431 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.1■□□□□ 0.97
SOX2P48431 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX2P48431 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.09■□□□□ 0.97
SOX2P48431 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SOX2P48431 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.09■□□□□ 0.97
SOX2P48431 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.09■□□□□ 0.97
SOX2P48431 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX2P48431 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SOX2P48431 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SOX2P48431 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX2P48431 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.08■□□□□ 0.97
SOX2P48431 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX2P48431 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX2P48431 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX2P48431 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SOX2P48431 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SOX2P48431 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.08■□□□□ 0.96
SOX2P48431 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.96
SOX2P48431 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.07■□□□□ 0.96
SOX2P48431 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX2P48431 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SOX2P48431 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SOX2P48431 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.07■□□□□ 0.96
SOX2P48431 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX2P48431 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX2P48431 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SOX2P48431 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.06■□□□□ 0.96
SOX2P48431 MIR219A2-201ENST00000608502 1504 ntBASIC21.06■□□□□ 0.96
SOX2P48431 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX2P48431 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SOX2P48431 AL139125.2-201ENST00000623134 1869 ntBASIC21.05■□□□□ 0.96
SOX2P48431 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX2P48431 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX2P48431 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.05■□□□□ 0.96
SOX2P48431 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX2P48431 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.05■□□□□ 0.96
SOX2P48431 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX2P48431 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX2P48431 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX2P48431 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX2P48431 LINC01971-201ENST00000617888 1048 ntBASIC21.04■□□□□ 0.96
SOX2P48431 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.04■□□□□ 0.96
SOX2P48431 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX2P48431 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SOX2P48431 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SOX2P48431 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SOX2P48431 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SOX2P48431 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.02■□□□□ 0.96
SOX2P48431 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX2P48431 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX2P48431 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX2P48431 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX2P48431 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L13-201ENST00000554103 1267 ntBASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L15-201ENST00000611059 1267 ntBASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L23-201ENST00000615195 1269 ntBASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L24-201ENST00000617576 1269 ntBASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L22-201ENST00000618238 1269 ntBASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L20-201ENST00000619712 1269 ntBASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L21-201ENST00000622058 1269 ntBASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L10-201ENST00000622460 1267 ntBASIC21.02■□□□□ 0.96
SOX2P48431 DUX4L25-201ENST00000624915 1269 ntBASIC21.02■□□□□ 0.96
SOX2P48431 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX2P48431 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SOX2P48431 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.02■□□□□ 0.95
SOX2P48431 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SOX2P48431 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SOX2P48431 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SOX2P48431 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SOX2P48431 AC008813.1-201ENST00000536597 885 ntBASIC21.01■□□□□ 0.95
SOX2P48431 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.01■□□□□ 0.95
SOX2P48431 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SOX2P48431 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SOX2P48431 AL359258.2-201ENST00000564063 1566 ntBASIC21.01■□□□□ 0.95
SOX2P48431 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SOX2P48431 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SOX2P48431 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21■□□□□ 0.95
SOX2P48431 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21■□□□□ 0.95
SOX2P48431 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21■□□□□ 0.95
SOX2P48431 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SOX2P48431 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SOX2P48431 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SOX2P48431 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX2P48431 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.99■□□□□ 0.95
SOX2P48431 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms