Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
PGK1P00558 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
PGK1P00558 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
PGK1P00558 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
PGK1P00558 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC27.33■■□□□ 1.97
PGK1P00558 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
PGK1P00558 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
PGK1P00558 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
PGK1P00558 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
PGK1P00558 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PGK1P00558 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
PGK1P00558 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC27.31■■□□□ 1.96
PGK1P00558 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
PGK1P00558 AC008406.3-201ENST00000620001 1374 ntBASIC27.31■■□□□ 1.96
PGK1P00558 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
PGK1P00558 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
PGK1P00558 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.3■■□□□ 1.96
PGK1P00558 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC27.3■■□□□ 1.96
PGK1P00558 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC27.3■■□□□ 1.96
PGK1P00558 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
PGK1P00558 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC27.29■■□□□ 1.96
PGK1P00558 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PGK1P00558 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC27.28■■□□□ 1.96
PGK1P00558 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
PGK1P00558 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC27.28■■□□□ 1.96
PGK1P00558 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC27.28■■□□□ 1.96
PGK1P00558 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
PGK1P00558 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC27.28■■□□□ 1.96
PGK1P00558 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PGK1P00558 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PGK1P00558 KRT125P-201ENST00000546827 989 ntBASIC27.27■■□□□ 1.96
PGK1P00558 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.27■■□□□ 1.96
PGK1P00558 MIR4787-201ENST00000607364 84 ntBASIC27.27■■□□□ 1.96
PGK1P00558 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
PGK1P00558 PROC-203ENST00000409048 1586 ntTSL 5 BASIC27.26■■□□□ 1.96
PGK1P00558 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
PGK1P00558 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PGK1P00558 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.25■■□□□ 1.95
PGK1P00558 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
PGK1P00558 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
PGK1P00558 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PGK1P00558 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
PGK1P00558 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PGK1P00558 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC27.24■■□□□ 1.95
PGK1P00558 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC27.24■■□□□ 1.95
PGK1P00558 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC27.24■■□□□ 1.95
PGK1P00558 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC27.24■■□□□ 1.95
PGK1P00558 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PGK1P00558 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
PGK1P00558 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
PGK1P00558 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.23■■□□□ 1.95
PGK1P00558 BX664725.1-201ENST00000438252 379 ntBASIC27.23■■□□□ 1.95
PGK1P00558 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
PGK1P00558 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PGK1P00558 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
PGK1P00558 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
PGK1P00558 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC27.22■■□□□ 1.95
PGK1P00558 UNC93B8-201ENST00000511903 705 ntBASIC27.22■■□□□ 1.95
PGK1P00558 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PGK1P00558 MIR935-201ENST00000401179 91 ntBASIC27.21■■□□□ 1.95
PGK1P00558 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
PGK1P00558 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.21■■□□□ 1.95
PGK1P00558 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PGK1P00558 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PGK1P00558 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
PGK1P00558 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC27.2■■□□□ 1.94
PGK1P00558 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
PGK1P00558 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
PGK1P00558 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.2■■□□□ 1.94
PGK1P00558 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
PGK1P00558 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
PGK1P00558 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.19■■□□□ 1.94
PGK1P00558 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
PGK1P00558 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC27.19■■□□□ 1.94
PGK1P00558 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
PGK1P00558 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC27.19■■□□□ 1.94
PGK1P00558 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
PGK1P00558 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
PGK1P00558 AL449106.1-201ENST00000608517 1980 ntBASIC27.18■■□□□ 1.94
PGK1P00558 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
PGK1P00558 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC27.18■■□□□ 1.94
PGK1P00558 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
PGK1P00558 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
PGK1P00558 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
PGK1P00558 AC022616.5-201ENST00000518796 181 ntBASIC27.17■■□□□ 1.94
PGK1P00558 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC27.17■■□□□ 1.94
PGK1P00558 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
PGK1P00558 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC27.16■■□□□ 1.94
PGK1P00558 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.16■■□□□ 1.94
PGK1P00558 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PGK1P00558 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PGK1P00558 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC27.16■■□□□ 1.94
PGK1P00558 KRT16P3-201ENST00000439127 1283 ntBASIC27.15■■□□□ 1.94
PGK1P00558 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC27.15■■□□□ 1.94
PGK1P00558 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
PGK1P00558 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
PGK1P00558 KRT18P24-201ENST00000344739 1156 ntBASIC27.14■■□□□ 1.94
PGK1P00558 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
PGK1P00558 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC27.13■■□□□ 1.93
PGK1P00558 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms