Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC3O43542 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.65■□□□□ 0.9
XRCC3O43542 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC3O43542 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC3O43542 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.65■□□□□ 0.9
XRCC3O43542 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.65■□□□□ 0.9
XRCC3O43542 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC3O43542 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC3O43542 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC3O43542 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC3O43542 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC3O43542 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.64■□□□□ 0.9
XRCC3O43542 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
XRCC3O43542 AC133561.1-201ENST00000568600 2415 ntBASIC20.64■□□□□ 0.89
XRCC3O43542 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC3O43542 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC3O43542 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC3O43542 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC3O43542 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC3O43542 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.64■□□□□ 0.89
XRCC3O43542 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC3O43542 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
XRCC3O43542 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC3O43542 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.63■□□□□ 0.89
XRCC3O43542 AC012676.1-201ENST00000574705 1949 ntBASIC20.63■□□□□ 0.89
XRCC3O43542 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.63■□□□□ 0.89
XRCC3O43542 DUX4L28-201ENST00000623687 678 ntBASIC20.63■□□□□ 0.89
XRCC3O43542 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.63■□□□□ 0.89
XRCC3O43542 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC3O43542 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC3O43542 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC3O43542 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC3O43542 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
XRCC3O43542 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
XRCC3O43542 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
XRCC3O43542 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC3O43542 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC3O43542 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC3O43542 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC3O43542 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC3O43542 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.61■□□□□ 0.89
XRCC3O43542 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.61■□□□□ 0.89
XRCC3O43542 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.61■□□□□ 0.89
XRCC3O43542 LINC01124-201ENST00000409786 2117 ntBASIC20.61■□□□□ 0.89
XRCC3O43542 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC3O43542 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC3O43542 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC3O43542 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
XRCC3O43542 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
XRCC3O43542 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC3O43542 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC3O43542 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC3O43542 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC3O43542 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC3O43542 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.6■□□□□ 0.89
XRCC3O43542 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.6■□□□□ 0.89
XRCC3O43542 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC3O43542 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC3O43542 AP003733.4-201ENST00000623785 1697 ntBASIC20.6■□□□□ 0.89
XRCC3O43542 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
XRCC3O43542 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.59■□□□□ 0.89
XRCC3O43542 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC3O43542 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC3O43542 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC3O43542 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC3O43542 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC3O43542 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
XRCC3O43542 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
XRCC3O43542 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
XRCC3O43542 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
XRCC3O43542 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
XRCC3O43542 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
XRCC3O43542 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.58■□□□□ 0.89
XRCC3O43542 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC20.58■□□□□ 0.89
XRCC3O43542 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
XRCC3O43542 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
XRCC3O43542 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
XRCC3O43542 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
XRCC3O43542 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.57■□□□□ 0.88
XRCC3O43542 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.57■□□□□ 0.88
XRCC3O43542 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.57■□□□□ 0.88
XRCC3O43542 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC3O43542 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.57■□□□□ 0.88
XRCC3O43542 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC3O43542 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC3O43542 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC3O43542 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
XRCC3O43542 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC3O43542 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
XRCC3O43542 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC3O43542 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC3O43542 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC20.55■□□□□ 0.88
XRCC3O43542 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.55■□□□□ 0.88
XRCC3O43542 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.55■□□□□ 0.88
XRCC3O43542 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC3O43542 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC3O43542 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.54■□□□□ 0.88
XRCC3O43542 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.54■□□□□ 0.88
XRCC3O43542 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC3O43542 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms